TSPS-887 make low pass imputation workflow driven by contig input (#1803)

* make low pass imputation workflow contig driven

---------

Co-authored-by: Jose Soto <jsoto@broadinstitute.org>
Co-authored-by: GitHub Action <action@github.com>

Author: 3 people

pipeline_versions.txt

@@ -4,7 +4,7 @@ BuildIndices	 5.1.0	2026-02-13
 CramToUnmappedBams	 1.1.3	2024-08-02 
 ExomeGermlineSingleSample	 3.2.7	2026-01-21 
 ExomeReprocessing	 3.3.7	2026-01-21 
-Glimpse2LowPassImputation	 0.0.2	2026-03-19 
+Glimpse2LowPassImputation	 0.0.3	2026-03-25 
 IlluminaGenotypingArray	 1.12.27	2026-01-21 
 Imputation	 1.1.23	2025-10-03 
 ImputationBeagle	 3.0.1	2026-02-23 

pipelines/wdl/glimpse/low_pass_imputation/Glimpse2LowPassImputation.changelog.md

@@ -1,3 +1,9 @@
+# 0.0.3
+2026-03-25 (Date of Last Commit)
+
+* Reorganize wdl to be able to run on contigs more easily.  Now the workflow is fully driven by the `contigs` input
+* The wdl now expects the reference related files to all live under the same cloud base path
+
 # 0.0.2
 2026-03-19 (Date of Last Commit)