replace azure capability with aws capability for reblock (#1752)

* replace azure capability with aws capability for reblock

* Updated pipeline_versions.txt with all pipeline version information

* Updated pipeline_versions.txt with all pipeline version information

* Update changelog for version 2.4.4

Updated the date of the last commit and replaced Azure docker with AWS docker.

* Updated pipeline_versions.txt with all pipeline version information

* update changelog

* Updated pipeline_versions.txt with all pipeline version information

* update version

* Updated pipeline_versions.txt with all pipeline version information

* revert version

* Updated pipeline_versions.txt with all pipeline version information

* update UltimaGenomicsWholeGenomeGermline.changelog.md

* Updated pipeline_versions.txt with all pipeline version information

* dummy commit to restart tests

---------

Co-authored-by: GitHub Action <action@github.com>
Co-authored-by: npetrill <npetrill@broadinstitute.org>

Author: 3 people

pipeline_versions.txt

@@ -15,12 +15,12 @@ PairedTag	 2.1.10	2026-01-22
 PeakCalling	 1.0.1	2025-08-11 
 Pipeline Name	Version	Date of Last Commit
 RNAWithUMIsPipeline	 1.0.20	2026-01-21 
-ReblockGVCF	 2.4.4	2026-01-21 
+ReblockGVCF	 2.4.4	2026-01-29 
 SlideSeq	 3.6.4	2026-01-22 
 SlideTags	 1.0.7	2026-01-26 
 UltimaGenomicsJointGenotyping	 1.2.3	2025-08-11 
 UltimaGenomicsWholeGenomeCramOnly	 1.1.3	2026-01-21 
-UltimaGenomicsWholeGenomeGermline	 1.2.2	2026-01-21 
+UltimaGenomicsWholeGenomeGermline	 1.2.2	2026-01-29 
 VariantCalling	 2.2.8	2026-01-21 
 WholeGenomeGermlineSingleSample	 3.3.7	2026-01-21 
 WholeGenomeReprocessing	 3.3.7	2026-01-21 

pipelines/wdl/dna_seq/germline/joint_genotyping/reblocking/ReblockGVCF.changelog.md

@@ -1,7 +1,8 @@
 # 2.4.4
-2026-01-21 (Date of Last Commit)
+2026-01-29 (Date of Last Commit)
 
 * Moved inputs into new Google buckets. This change does not affect the outputs of the pipeline
+* Replace Azure docker with AWS docker
 
 # 2.4.3
 2025-10-09 (Date of Last Commit)
@@ -170,4 +171,4 @@ Tool, task, and workflow now require a reference.
 * Added 'allowNestedInputs: true' metadata parameter to wdl to support Cromwell version 48 and above
 
 # 1.0
-Initial release of the ReblockGVCF pipeline. This is a WDL 1.0 version of the [workflow run in Terra](https://portal.firecloud.org/?return=terra#methods/methodsDev/ReblockGVCF-gatk4_exomes_goodCompression/4) for joint-genotyping projects. 
+Initial release of the ReblockGVCF pipeline. This is a WDL 1.0 version of the [workflow run in Terra](https://portal.firecloud.org/?return=terra#methods/methodsDev/ReblockGVCF-gatk4_exomes_goodCompression/4) for joint-genotyping projects. 

pipelines/wdl/dna_seq/germline/joint_genotyping/reblocking/ReblockGVCF.wdl

@@ -26,14 +26,14 @@ workflow ReblockGVCF {
   String gvcf_basename = basename(gvcf, gvcf_file_extension)
   # docker images
   String gatk_docker_gcp = "us.gcr.io/broad-gatk/gatk:4.6.1.0"
-  String gatk_docker_azure = "terrapublic.azurecr.io/gatk:4.6.1.0"
-  String gatk_docker = if cloud_provider == "gcp" then gatk_docker_gcp else gatk_docker_azure
+  String gatk_docker_aws = "broadinstitute/gatk:4.6.1.0"
+  String gatk_docker = if cloud_provider == "gcp" then gatk_docker_gcp else gatk_docker_aws
 
-  # make sure either gcp or azr is supplied as cloud_provider input
-  if ((cloud_provider != "gcp") && (cloud_provider != "azure")) {
+  # make sure either gcp or aws is supplied as cloud_provider input
+  if ((cloud_provider != "gcp") && (cloud_provider != "aws")) {
     call utils.ErrorWithMessage as ErrorMessageIncorrectInput {
       input:
-        message = "cloud_provider must be supplied with either 'gcp' or 'azure'."
+        message = "cloud_provider must be supplied with either 'gcp' or 'aws'."
     }
   }
 
@@ -72,6 +72,7 @@ workflow ReblockGVCF {
     File reblocked_gvcf = Reblock.output_vcf
     File reblocked_gvcf_index = Reblock.output_vcf_index
   }
+
   meta {
     allowNestedInputs: true
   }

pipelines/wdl/dna_seq/germline/single_sample/ugwgs/UltimaGenomicsWholeGenomeGermline.changelog.md

@@ -1,8 +1,8 @@
 # 1.2.2
-2026-01-21 (Date of Last Commit)
+2026-01-29 (Date of Last Commit)
 
 * Moved inputs into new Google buckets. This change does not affect the outputs of the pipeline
-
+* Updated the ReblockGVCF.wdl to be compatible with AWS. This changes does not affect the outputs of the pipeline
 # 1.2.1
 2025-10-09 (Date of Last Commit)