Use a standard machine type

jessicaway · jessicaway · commit cd76474c57b8 · 2026-02-27T14:24:24.000-07:00
diff --git a/all_of_us/mitochondria/mt_coverage_merge.wdl b/all_of_us/mitochondria/mt_coverage_merge.wdl
@@ -621,10 +621,11 @@ task finalize_mt_with_covdb {
         Boolean overwrite = false
 
         # Runtime parameters
-        Int memory_gb = 256
-        Int cpu = 40
+        Int memory_gb = 768
+        Int cpu = 96
         Int disk_gb = 4000
         String disk_type = "SSD"
+        String machine_type = "n2d-highmem-96"
     }
 
     command <<<
@@ -705,6 +706,7 @@ task finalize_mt_with_covdb {
         memory: memory_gb + " GB"
         cpu: cpu
         disks: "local-disk " + disk_gb + " " + disk_type
+        predefinedMachineType: machine_type
     }
 }
 

Original file line number	Diff line number	Diff line change
`@@ -621,10 +621,11 @@ task finalize_mt_with_covdb {`
`621`	`621`	`Boolean overwrite = false`
`622`	`622`
`623`	`623`	`# Runtime parameters`
`624`		`- Int memory_gb = 256`
`625`		`- Int cpu = 40`
	`624`	`+ Int memory_gb = 768`
	`625`	`+ Int cpu = 96`
`626`	`626`	`Int disk_gb = 4000`
`627`	`627`	`String disk_type = "SSD"`
	`628`	`+ String machine_type = "n2d-highmem-96"`
`628`	`629`	`}`
`629`	`630`
`630`	`631`	`command <<<`
`@@ -705,6 +706,7 @@ task finalize_mt_with_covdb {`
`705`	`706`	`memory: memory_gb + " GB"`
`706`	`707`	`cpu: cpu`
`707`	`708`	`disks: "local-disk " + disk_gb + " " + disk_type`
	`709`	`+ predefinedMachineType: machine_type`
`708`	`710`	`}`
`709`	`711`	`}`
`710`	`712`