EEG-Active-Cognitive-Fatigue-Pipeline/.gitignore at main · brodie-neuro/EEG-Active-Cognitive-Fatigue-Pipeline · GitHub

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# --- 1. EEG Data (The big files) ---
raw/
*.vhdr
*.vmrk
*.eeg
*.bdf
*.fif
*.set
*.fdt
*.edf

# --- 2. Outputs & Temporary files ---
outputs/
__pycache__/
*.pyc
.idea/
.venv/
env/

# --- 3. Documentation & Images (Privacy) ---
*.docx
*.pdf
*.png
*.svg
*.pptx

# --- 4. System Files ---
.DS_Store
Thumbs.db
.env

# --- 5. Exclude WAND script (separate repo) ---
WAND_full_induction.py

# --- 6. Old/superseded analysis plans and removed scripts ---
docs/old_analysis/
docs/v2_plan_text.txt
eeg_pipeline/analysis/removed/
archive/
eeg_pipeline/outputs/analysis_figures/
eeg_pipeline/outputs/group_figures/

# --- 7. Local development files ---
ERRORS_AND_FIXES.md
eeg_pipeline/outputs/logs/
eeg_pipeline/outputs/qc/
eeg_pipeline/outputs/reports/
vis_log.txt

# --- 8. Local datasets and pipeline run artifacts ---
openneuro_ds004350/
eeg_pipeline/outputs/

# --- 9. Local config artifacts ---
eeg_pipeline/config/backups/
eeg_pipeline/config/presets/
eeg_pipeline/config/adapters/*.json