rgeedim/.github/workflows/test-coverage.yml at main · brownag/rgeedim · GitHub

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# Workflow derived from https://github.com/r-lib/actions/tree/v2/examples
# Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help
on:
  push:
    branches: [main, master]
  pull_request:

name: test-coverage

permissions:
  contents: 'read'
  id-token: 'write'

jobs:
  test-coverage:
    runs-on: ubuntu-latest
    env:
      R_REMOTES_NO_ERRORS_FROM_WARNINGS: true
      GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
      GCP_PROJECT_ID: ${{ secrets.GCP_PROJECT_ID }}
      WIF_PROVIDER: ${{ secrets.WIF_PROVIDER }}
      GCP_SA_EMAIL: ${{ secrets.GCP_SA_EMAIL }}

    steps:
      - uses: actions/checkout@v6

      - uses: r-lib/actions/setup-r@v2
        with:
          use-public-rspm: true

      - uses: actions/setup-python@v6
        with:
          python-version: '3.13'
          architecture: 'x64'

      - uses: r-lib/actions/setup-pandoc@v2

      - uses: r-lib/actions/setup-r-dependencies@v2
        with:
          extra-packages: any::remotes, any::covr, any::xml2, rstudio/reticulate, local::.
          needs: coverage

      - name: Install Python dependencies
        run: |
          reticulate::virtualenv_create("r-rgeedim")
          reticulate::use_virtualenv("r-rgeedim")
          reticulate::virtualenv_install("r-rgeedim", "geedim")
        shell: Rscript {0}

      - name: Authenticate to Google Cloud (WIF)
        uses: 'google-github-actions/auth@v3'
        with:
          workload_identity_provider: ${{ secrets.WIF_PROVIDER }}
          service_account: ${{ secrets.GCP_SA_EMAIL }}
          token-format: 'access_token'
          access_token_lifetime: '3600s'

      - name: Set up Google Application Credentials for rgeedim
        run: |
          creds_file <- Sys.getenv("GOOGLE_APPLICATION_CREDENTIALS")
          if (creds_file == "" || !file.exists(creds_file)) {
            stop("GOOGLE_APPLICATION_CREDENTIALS not set or file does not exist")
          }
        shell: Rscript {0}

      - name: Authenticate with Earth Engine
        env:
          GCP_PROJECT_ID: ${{ secrets.GCP_PROJECT_ID }}
        run: |
          rgeedim::gd_authenticate()
          rgeedim::gd_initialize(project = Sys.getenv("GCP_PROJECT_ID"))
        shell: Rscript {0}

      - name: Test coverage
        run: |
          cov <- covr::package_coverage(
            quiet = FALSE,
            clean = FALSE,
            install_path = file.path(normalizePath(Sys.getenv("RUNNER_TEMP"), winslash = "/"), "package")
          )
          print(cov)
          covr::to_cobertura(cov)
        shell: Rscript {0}

      - uses: codecov/codecov-action@v7
        with:
          # Fail if error if not on PR, or if on PR and token is given
          fail_ci_if_error: ${{ github.event_name != 'pull_request' || secrets.CODECOV_TOKEN }}
          files: ./cobertura.xml
          plugins: noop
          disable_search: true
          token: ${{ secrets.CODECOV_TOKEN }}

      - name: Show testthat output
        if: always()
        run: |
          ## --------------------------------------------------------------------
          find '${{ runner.temp }}/package' -name 'testthat.Rout*' -exec cat '{}' \; || true
        shell: bash

      - name: Upload test results
        if: failure()
        uses: actions/upload-artifact@v7
        with:
          name: coverage-test-failures
          path: ${{ runner.temp }}/package