Merge remote-tracking branch 'origin/main'

Author: ruochiz

scprinter/seq/scripts/motif_delta_effects.py

@@ -156,8 +156,10 @@ def main():
         genome = scp.genome.hg38
     elif genome == "mm10":
         genome = scp.genome.mm10
+    elif genome == "mm39":
+        genome = scp.genome.mm39
     else:
-        print("genome not in ['hg38', mm10'], reading as custom genome")
+        print("genome not in ['hg38', 'mm10', 'mm39'], reading as custom genome")
         try:
             genome = pickle.load(open(genome, "rb"))
         except:

scprinter/seq/scripts/seq2print_lora_train.py

@@ -164,8 +164,10 @@ def entry(config=None, wandb_run_name="", enable_wandb=True, resume=False):
         genome = scp.genome.hg38
     elif genome == "mm10":
         genome = scp.genome.mm10
+    elif genome == "mm39":
+        genome = scp.genome.mm39
     else:
-        print("genome not in ['hg38', mm10'], reading as custom genome")
+        print("genome not in ['hg38', 'mm10', 'mm39'], reading as custom genome")
         try:
             genome = pickle.load(open(genome, "rb"))
         except: