Update README with new documentation links and badges

Updated documentation links to point to the dev version and modified the build status badge to reflect the master branch.

Author: BTV25

README.md

@@ -1,11 +1,8 @@
-[![Stable](https://img.shields.io/badge/docs-stable-blue.svg)](https://byuflowlab.github.io/FLOWFarm.jl/stable)
+[![Stable](https://img.shields.io/badge/docs-stable-blue.svg)](https://flow.byu.edu/FLOWFarm.jl/stable)
 [![Dev](https://img.shields.io/badge/docs-dev-blue.svg)](https://flow.byu.edu/FLOWFarm.jl/dev)
-[![Build Status](https://github.com/byuflowlab/FLOWFarm.jl/actions/workflows/CI.yml/badge.svg?branch=main)](https://github.com/byuflowlab/FLOWFarm.jl/actions/workflows/CI.yml?query=branch%3Amain)
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+[![Build Status](https://github.com/byuflowlab/FLOWFarm.jl/actions/workflows/CI.yml/badge.svg?branch=master)](https://github.com/byuflowlab/FLOWFarm.jl/actions/workflows/CI.yml?query=branch%3Amaster)
 # FLOWFarm.jl
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 **Summary:** Wind farm simulation tool for gradient-based optimization.
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 **Authors:** Jared J. Thomas, Andrew P.J. Stanley
 
 ## Features
@@ -15,24 +12,19 @@
 - Runs on a single core, across multiple cores (threaded), or on multiple machines (distributed).
 - Designed so that new model implementations can be included by adding a single method
 - Allows for Wake Expansion Continuation (WEC) as described [here](http://flowlab.groups.et.byu.net/preprints/Thomas2021.pdf)
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 ## Installation
 
 ### Install FLOWFarm
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 ```
 julia
 (v1.x) pkg> add FLOWFarm
 ```
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 ## Documentation
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-* Begin with the [quick start tutorial](https://flow.byu.edu/FLOWFarm.jl/Tutorial/).
-* An explanation of how to utilize sparsity can be found in [wind farm struct](https://flow.byu.edu/FLOWFarm.jl/Wind_Farm_Struct/).
-* More advanced topics are covered in the [how-to guide](https://flow.byu.edu/FLOWFarm.jl/How_to/).
-* Theory details, and links, can be found in the [theory](https://flow.byu.edu/FLOWFarm.jl/Explanation) page.
-* Doc strings can be found in the [references](https://flow.byu.edu/FLOWFarm.jl/Reference/) page.
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+* Begin with the [quick start tutorial](https://flow.byu.edu/FLOWFarm.jl/dev/Tutorial/).
+* An explanation of how to utilize sparsity can be found in [wind farm struct](https://flow.byu.edu/FLOWFarm.jl/dev/Wind_Farm_Struct/).
+* More advanced topics are covered in the [how-to guide](https://flow.byu.edu/FLOWFarm.jl/dev/How_to/).
+* Theory details, and links, can be found in the [theory](https://flow.byu.edu/FLOWFarm.jl/dev/Explanation) page.
+* Doc strings can be found in the [references](https://flow.byu.edu/FLOWFarm.jl/dev/Reference/) page.
+* 
 **Citing:**
-Thomas, McOmber, and Ning "Wake Expansion Continuation: Multi-Modality Reduction in the Wind Farm Layout Optimization Problem" *Wind Energy* (in review), -->
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+Thomas, McOmber, and Ning "Wake Expansion Continuation: Multi-Modality Reduction in the Wind Farm Layout Optimization Problem" *Wind Energy* (in review),