User Manual update (#70)

* Update cBLUE version number

* Updated VDatum MCU values from NOAA

https://vdatum.noaa.gov/docs/est_uncertainties.html

* Removed turbidity label text

* Move water height up next to enviromental params

* Update cBLUE user manual

Author: kiefk

CBlueAppGui.py

@@ -136,7 +136,7 @@ def main():
     root = tk.Tk()
     root.wm_title("cBLUE")
     root.iconbitmap(root, "cBLUE_icon.ico")
-    root.geometry("270x740")
+    root.geometry("270x730")
     norm_font_bold = ("Verdanna", 10, "bold")
     padx = (30, 30)
     pady = (10, 0)
@@ -201,7 +201,6 @@ def main():
     dir_frame.pack(padx=padx, pady=pady, fill="x")
 
     # Environmental parameters
-
     def add_tab(options, tab_name, label_text=None):
         """Add tab to Notebook and return Radiobutton variable"""
         tab = ttk.Frame(subaqueous_method_tabs)
@@ -219,10 +218,20 @@ def add_tab(options, tab_name, label_text=None):
     tk.Label(env_frame, text="Environmental Parameters", font=norm_font_bold).pack()
     subaqueous_method_tabs = ttk.Notebook(env_frame)
     wind_var = add_tab(WIND_OPTIONS, tab_name="Water Surface")
-    turbidity_var = add_tab(TURBIDITY_OPTIONS, tab_name="Turbidity", label_text="Turbidity (kd_490)")
+    turbidity_var = add_tab(TURBIDITY_OPTIONS, tab_name="Turbidity")
     subaqueous_method_tabs.pack(fill="x")
     env_frame.pack(padx=padx, pady=pady, fill="x")
 
+    # Water Height
+    water_height_frame = tk.Frame(root)
+    tk.Label(water_height_frame, text="Water Height", font=norm_font_bold).pack()
+    water_height_var = tk.StringVar()
+    water_height_var.set(f'{config_dict["water_surface_ellipsoid_height"]:.2f}')
+    water_height_msg = "Nominal water surface ellipsoid height \n(in meters):"
+    tk.Label(water_height_frame, text=water_height_msg).pack()
+    tk.Entry(water_height_frame, textvariable=water_height_var, justify="center").pack()
+    water_height_frame.pack(padx=padx, pady=pady, fill="x")
+
     # VDatum Region
     vdatum_frame = tk.Frame(root)
     tk.Label(vdatum_frame, text="VDatum Region", font=norm_font_bold).pack()
@@ -256,16 +265,6 @@ def add_tab(options, tab_name, label_text=None):
     ttk.Radiobutton(csv_frame, text="ExtraBytes + CSV", value=True, variable=csv_var).pack(fill="x", padx=padx[-1])
     csv_frame.pack(padx=padx, pady=pady, fill="x")
 
-    # Water Height
-    water_height_frame = tk.Frame(root)
-    tk.Label(water_height_frame, text="Water Height", font=norm_font_bold).pack()
-    water_height_var = tk.StringVar()
-    water_height_var.set(f'{config_dict["water_surface_ellipsoid_height"]:.2f}')
-    water_height_msg = "Nominal water-surface ellipsoid height \n(in meters):"
-    tk.Label(water_height_frame, text=water_height_msg).pack()
-    tk.Entry(water_height_frame, textvariable=water_height_var, justify="center").pack()
-    water_height_frame.pack(padx=padx, pady=pady, fill="x")
-
     def start_process(just_save_config=False):
         """Generate command for CBlueApp.py command line interface. Run the command."""
         # Don't allow saving config if process button is disabled

Manual/src/figs/CREATE.png renamed to Manual/cBLUE User Manual - 10-31-23 Update/figs/CREATE.png

@@ -7,6 +7,6 @@
 \newcommand{\semester}{\ }
 \newcommand{\csection}{\ }
 \newcommand{\ponderation}{\ }
-\newcommand{\coursetitle}{CBlue}
-\newcommand{\coursenumber}{[V3.0.0]}
+\newcommand{\coursetitle}{cBLUE}
+\newcommand{\coursenumber}{[V3.1]}
 \newcommand{\prerequisite}{}

Manual/src/figs/GitHubDesktop.png renamed to Manual/cBLUE User Manual - 10-31-23 Update/figs/GitHubDesktop.png

@@ -17,7 +17,7 @@
     \raggedleft%
     {\Large \textsc{\coursetitle { } \coursenumber}\par}
     \doublerule % insert a double rule.
-    \textsc{Author}: \instructor\\
+    \textsc{Authors}: \instructor \\ and \instructorsecond\\
 \end{minipage}%
 \vspace{1.0cm}
 {

Manual/src/figs/IMPORT.png renamed to Manual/cBLUE User Manual - 10-31-23 Update/figs/IMPORT.png

@@ -44,7 +44,7 @@
 %-- @see http://ctan.sharelatex.com/tex-archive/fonts/fontawesome/doc/fontawesome.pdf
 % Font Awesome  http://ctan.math.washington.edu/tex-archive/fonts/fontawesome5/doc/fontawesome5.pdf
 % https://muug.ca/mirror/ctan/fonts/fontawesome5/doc/fontawesome5.pdf
-\usepackage{fontawesome5}
+%\usepackage{fontawesome5}
 \usepackage{fontawesome}
 %---------------------------------
 % ==== Font setup.
@@ -63,11 +63,13 @@
 
 \pagestyle{empty}
 \usepackage{graphicx}
+\usepackage[export]{adjustbox}
 \usepackage{multicol}
 \usepackage{blindtext}  
 \usepackage{vhistory} % for making a table for the revision history.
 \usepackage{float}
 \usepackage{amsmath}
+\usepackage{subfig}
 
 %dummy text - delete me later - no problem!
 \usepackage{lipsum}

Manual/src/figs/SBET_format.png renamed to Manual/cBLUE User Manual - 10-31-23 Update/figs/SBET_format.png

@@ -7,3 +7,5 @@
 \newcommand{\instructor}{Forrest Corcoran}
 \newcommand{\college}{Oregon State University}
 \newcommand{\email}{[email protected]}
+\newcommand{\instructorsecond}{Keana Kief}
+\newcommand{\emailsecond}{[email protected]}

Manual/src/figs/add.png renamed to Manual/cBLUE User Manual - 10-31-23 Update/figs/add.png

@@ -6,7 +6,7 @@
     },
     "multiprocess": "False",
     "number_cores": 4,
-    "cBLUE_version": "v3.0",
+    "cBLUE_version": "v3.1.0",
     "sensor_model": "",
     "water_surface_ellipsoid_height": 0.00,
     "error_type": ""

Manual/src/figs/cBLUE_splash.png renamed to Manual/cBLUE User Manual - 10-31-23 Update/figs/cBLUE_splash.png

@@ -1,38 +1,49 @@
 "Maine, New Hampshire, Massachusetts - Gulf of Maine"	13.4
-"New York/Connecticut/Rhode Island - Outer NY Bight, eastern Long Island Sound, Block Island Sound"	9.7
-New York - The Great South Bay	11.6
-"New Jersey/New York/Connecticut - Northern NJ, NY Harbor, western Long Island Sound"	9.4
-New Jersey - Coastal embayments	9.2
-Virginia/Maryland/Delaware/New Jersey - Mid-Atlantic Bight shelf	8.9
-Delaware - Delaware Bay	11.8
-Virginia/Maryland/Delaware - Coastal embayments	8.9
-Virginia/Maryland - Chesapeake Bay	9.2
-North Carolina - Inland waterways and sounds	8.7
-North Carolina - Coastal shelf	8.7
-Georgia/South Carolina - Sapelo Island GA to the SC/NC border	14.8
-"Florida/Georgia - Shelf, Fort Lauderdale FL to Sapelo Island GA"	9.3
-"Florida/Georgia - Inland water, Fort Lauderdale FL to Sapelo Is"	10
+"New York/Connecticut/Rhode Island - Outer NY Bight, eastern Long Island Sound, Block Island Sound"	9.4
+"New York - The Great South Bay"	9.4
+"New Jersey/New York/Connecticut - Northern NJ, NY Harbor, western Long Island Sound"	9.1
+"New Jersey - Coastal embayments - North"	9.0
+"New Jersey - Coastal embayments - South"	6.5
+"Virginia/Maryland/Delaware/New Jersey - Mid-Atlantic Bight shelf"	6.8
+"Delaware - Delaware Bay"	6.4
+"Virginia/Maryland - East Chesapeake Bay"	6.5
+"Maryland - Northwest Chesapeake Bay"	6.5
+"Virginia - Southwest Chesapeake Bay"	6.5
+"Virginia/Maryland/Delaware - Coastal embayments"	6.6
+"North Carolina - Inland waterways and sounds"	9.9
+"North Carolina - Coastal shelf"	9.9
+"Georgia/South Carolina/North Carolina-Sapelo Island GA to Holden Beach NC"	15.5
+"Florida/Georgia - Shelf, Fort Lauderdale FL to Sapelo Island GA"	10.4
+"Florida/Georgia - Inland water, Fort Lauderdale FL to Sapelo Is"	11.1
 "Florida - South Florida, Naples to Fort Lauderdale FL, and Florida Bay"	9.6
-Florida - South Florida Inland Waterways	9.4
-Florida - Anclote Key to Naples	13
-Florida - Apalachicola to Anclote Key	10.2
-Florida - St. Joseph Bay and the Gulf of Mexico	8.6
-Florida - St. Andrews Bay and the Gulf of Mexico	8
+"Florida - South Florida Inland Waterways"	9.4
+"Florida - Anclote Key to Naples"	13.0
+"Florida - Apalachicola to Anclote Key"	10.2
+"Florida - St. Joseph Bay and the Gulf of Mexico"	8.6
+"Florida - St. Andrews Bay and the Gulf of Mexico"	8.0
 "Florida - Perdido, Pensacola and Choctawhatchee Bays"	8.3
-Florida/Alabama - Gulf of Mexico from Mobile Bay to east of Choctawhatchee Bay	8.1
-Alabama - Mobile Bay and Perdido Bay	8.2
-Louisiana/Mississippi - Eastern Louisiana to Mississippi Sound	17.1
-Louisiana/Texas - western Louisiana to Galveston Bay	12.8
+"Florida/Alabama - Gulf of Mexico from Mobile Bay to east of Choctawhatchee Bay"	8.1
+"Alabama - Mobile Bay and Perdido Bay"	8.2
+"Louisiana/Mississippi - Eastern Louisiana to Mississippi Sound"	17.1
+"Louisiana/Texas - western Louisiana to Galveston Bay"	12.8
 "Texas - Lagoons, Galveston Bay to Matagorda Island"	12.5
 "Texas - Shelf, Galveston Bay to Matagorda Is."	9.4
-"Texas - Lagoons, Matagorda Island to US/Mexico border"	15.9
+"Texas - Lagoons, Matagorda Island to US/Mexico border"	15.8
 "Texas - Shelf, Matagorda Island to US/Mexico border"	8.2
-California - Southern California from Morro Bay south to US/Mexico border	8.1
-California - Monterey Bay to Morro Bay	8
-California - San Francisco Bay Vicinity	10.1
-Oregon/ California - Punta Gorda to Cape Blanco	13.1
-Oregon - Central Oregon	19.4
-Washington/Oregon - Columbia River and Southern Washington	22.6
-Washington - Strait of Juan de Fuca	14
-Washington - Puget Sound	9.7
-Puerto Rico and U.S Virgin Islands (uses PRVD02 and VIVD09 instead of NAVD88)	11.8
+"California - Southern California"	7.5
+"California - Southern California Inland"	6.7
+"California -Monterey Bay to Morro Bay"	8.0
+"California - San Francisco Bay Vicinity"	7.7
+"California - San Francisco Bay Inland"	6.5
+"California/Oregon - Coastal"	7.8
+"Oregon - Coastal Inland"	6.5
+"Oregon - Coastal"	7.8
+"Washington - Coastal"	7.9
+"Washington - Strait of Juan de Fuca Inland"	6.9
+"Washington - Strait of Juan de Fuca"	7.2
+"Washington - Puget Sound"	7.1
+"Washington/Oregon/California - Offshore"	9.1
+"Puerto Rico and U.S Virgin Islands (uses PRVD02 and VIVD09 instead of NAVD88)"	7.4
+"Alaska - Southeast, Yakutat to Glacier Bay"	13.2
+"Alaska - Southeast, Glacier Bay to Whale Bay"	13.2
+"Alaska - Southeast, Whale Bay to US/Canada Border"	13.2