Add fallback to pull that also tries the HTTP URL

cadetrdm/initialize_repo.py

@@ -242,10 +242,8 @@ def clone(project_url, path_to_repo: str = None, multi_options: List[str] = None
         path_to_repo = project_url.split("/")[-1]
         path_to_repo = path_to_repo.replace(".git", "")
     print(f"Cloning {project_url} into {path_to_repo}")
-    git.Repo.clone_from(project_url, path_to_repo, multi_options=multi_options)
-
     # During class instantiation, the output repo is cloned.
-    repo = ProjectRepo(path_to_repo)
+    repo = ProjectRepo.clone_from(to_path=path_to_repo, url=project_url, multi_options=multi_options)
 
     repo.fill_data_from_cadet_rdm_json()
 

cadetrdm/repositories.py

@@ -10,7 +10,7 @@
 from datetime import datetime
 from pathlib import Path
 from stat import S_IREAD, S_IWRITE
-from typing import List
+from typing import List, Optional
 from urllib.request import urlretrieve
 
 import cadetrdm
@@ -34,7 +34,6 @@ def validate_is_output_repo(path_to_repo):
         if rdm_data["is_project_repo"]:
             raise ValueError("Please use the URL to the output repository.")
 
-
 class BaseRepo:
     def __init__(self, repository_path=None, search_parent_directories=True, *args, **kwargs):
         """
@@ -185,6 +184,21 @@ def update(self):
             traceback.print_exc()
             print(f"Git command error in {self.path}: {e}")
 
+    @classmethod
+    def clone_from(cls, url, to_path, multi_options: Optional[List[str]] = None, **kwargs):
+        try:
+            git.Repo.clone_from(url, to_path, multi_options=multi_options, **kwargs)
+        except git.exc.GitCommandError as e:
+            if "Permission denied (publickey)" in e:
+                try:
+                    git.Repo.clone_from(ssh_url_to_http_url(url), to_path, multi_options=multi_options, **kwargs)
+                except Exception as e_inner:
+                    raise e_inner
+            else:
+                raise e
+        instance = cls(to_path)
+        return instance
+
     def add_remote(self, remote_url, remote_name=None):
         """
         Add a remote to the repository.
@@ -261,9 +275,10 @@ def import_remote_repo(self, source_repo_location, source_repo_branch, target_re
 
         print(f"Cloning from {source_repo_location} into {target_repo_location}")
         multi_options = ["--filter=blob:none", "--branch", source_repo_branch, "--single-branch"]
-        repo = git.Repo.clone_from(source_repo_location, target_repo_location, multi_options=multi_options)
-        repo.git.clear_cache()
-        repo.close()
+        repo = self.clone_from(url=source_repo_location, to_path=target_repo_location,
+                               multi_options=multi_options)
+        repo._git.clear_cache()
+        repo._git_repo.close()
 
         self.update_cadet_rdm_cache_json(source_repo_branch=source_repo_branch,
                                          target_repo_location=target_repo_location,
@@ -750,7 +765,7 @@ def _clone_output_repo(self, multi_options: List[str] = None):
         for output_remote in ssh_remotes + http_remotes:
             try:
                 print(f"Attempting to clone {output_remote} into {output_path}")
-                git.Repo.clone_from(output_remote, output_path, multi_options=multi_options)
+                _ = self.clone_from(output_remote, output_path, multi_options=multi_options)
             except Exception as e:
                 print(e)
             else:

tests/test_git_adapter.py

@@ -159,6 +159,9 @@ def try_initialize_from_remote():
           "test_repo_from_remote")
     assert try_init_gitpython_repo("test_repo_from_remote")
 
+    repo = ProjectRepo("test_repo_from_remote")
+    assert hasattr(repo, "")
+
 
 def test_init_over_existing_repo(monkeypatch):
     path_to_repo = Path("test_repo_2")

tests/test_gitlab_api.py

@@ -6,6 +6,7 @@
 from cadetrdm import initialize_repo, ProjectRepo
 from cadetrdm.io_utils import delete_path
 from cadetrdm.remote_integration import GitHubRemote, GitLabRemote
+from cadetrdm.repositories import BaseRepo
 
 
 @pytest.mark.server_api
@@ -26,15 +27,15 @@ def test_gitlab_create():
 
     response = remote.create_remote(url=url, namespace=namespace, name=name, username="r.jaepel")
 
-    git.Repo.clone_from(response.ssh_url_to_repo, "test_repo_remote")
+    BaseRepo.clone_from(response.ssh_url_to_repo, "test_repo_remote")
     delete_path("test_repo_remote")
 
     remote.delete_remote(url=url, namespace=namespace, name=name, username="r.jaepel")
 
     sleep(3)
 
     with pytest.raises(git.exc.GitCommandError):
-        git.Repo.clone_from(response.ssh_url_to_repo, "test_repo_remote")
+        BaseRepo.clone_from(response.ssh_url_to_repo, "test_repo_remote")
 
 
 @pytest.mark.server_api
@@ -60,13 +61,13 @@ def test_github_create():
 
     sleep(3)
 
-    git.Repo.clone_from(response.html_url, "test_repo_remote")
+    BaseRepo.clone_from(response.html_url, "test_repo_remote")
     delete_path("test_repo_remote")
 
     remote.delete_remote(namespace=namespace, name=name, username="r.jaepel")
 
     with pytest.raises(git.exc.GitCommandError):
-        git.Repo.clone_from(response.ssh_url, "test_repo_remote")
+        BaseRepo.clone_from(response.ssh_url, "test_repo_remote")
 
 
 @pytest.mark.server_api