Merge pull request #176 from camicroscope/develop

For 3.12.1

Author: birm

Dockerfile

@@ -1,6 +1,7 @@
 FROM node:20-alpine
 RUN apk add --no-cache git
 RUN apk add --no-cache openssl
+RUN apk add bash
 RUN mkdir /src
 COPY . /src
 WORKDIR /src

handlers/pathdbIipHandler.js

@@ -21,18 +21,14 @@ iipCheck = function(req, res, next) {
       const PDB_URL = process.env.PDB_URL || 'http://quip-pathdb';
       let requestedNode = req.iipFileRequested.replace("pathdb*", "");
       let lookupUrl = PDB_URL + "/node/" + requestedNode + "?_format=json";
-      console.log(lookupUrl);
       let pdbReqHeaders = {"Authorization": "Bearer " + auth.getToken(req)};
-      console.log(pdbReqHeaders);
       fetch(lookupUrl, {headers: pdbReqHeaders}).then((x)=>x.json()).then((x)=>{
-        console.log(x);
         // get path
         if (x && x['field_iip_path'] && x['field_iip_path'].length && x['field_iip_path'][0]['value']) {
           newFilepath = x['field_iip_path'][0]['value'];
           newFilepath = encodeURIComponent(newFilepath);
           newFilepath = newFilepath.replaceAll("%2F", "/");
           req.newFilepath = newFilepath;
-          console.log(req.newFilepath);
           next();
         } else {
           let err = {};

service/database/index.js

@@ -1,6 +1,12 @@
 const { getConnection } = require("./connector");
 const { transformIdToObjectId } = require("./util");
 
+let maxDocsInput = process.env.MAX_NUM_FIND_DOCS;
+let MAX_NUM_FIND_DOCS = parseInt(maxDocsInput, 10);
+if (Number.isNaN(MAX_NUM_FIND_DOCS) || MAX_NUM_FIND_DOCS <= 0) {
+  MAX_NUM_FIND_DOCS = Number.MAX_SAFE_INTEGER;
+}
+
 /**
  * @class Mongo
  * @description Handles database operations, called via handler. This is like a generic that
@@ -24,7 +30,7 @@ class Mongo {
             query = transformIdToObjectId(query);
 
             const collection = getConnection(database).collection(collectionName);
-            const data = await collection.find(query).toArray();
+            const data = await collection.find(query).limit(MAX_NUM_FIND_DOCS).toArray();
 
             /** allow caller method to toggle response transformation */
             if (transform) {