removed unused argument in widget

Author: jo-mueller

src/napari_stress/_reconstruction/toolbox.py

@@ -179,7 +179,6 @@ def _run(self):
             voxelsize=current_voxel_size,
             target_voxelsize=self.doubleSpinBox_target_voxelsize.value(),
             smoothing_sigma=self.doubleSpinBox_gaussian_blur.value(),
-            n_smoothing_iterations=self.spinBox_n_smoothing.value(),
             n_tracing_iterations=self.spinBox_n_refinement_steps.value(),
             resampling_length=self.doubleSpinBox_sampling_length.value(),
             n_points=self.spinBox_n_vertices.value(),
@@ -208,7 +207,6 @@ def reconstruct_droplet(
     voxelsize: np.ndarray = None,
     target_voxelsize: float = 1.0,
     smoothing_sigma: float = 1.0,
-    n_smoothing_iterations: int = 10,
     n_points: int = 512,
     n_tracing_iterations: int = 1,
     resampling_length: float = 5,
@@ -309,7 +307,7 @@ def reconstruct_droplet(
     # repeat tracing `n_tracing_iterations` times
     for _ in range(n_tracing_iterations):
         resampled_points = resample_pointcloud(
-            traced_points, sampling_length=resampling_length
+            traced_points[0], sampling_length=resampling_length
         )
 
         traced_points, trace_vectors = (
@@ -321,6 +319,8 @@ def reconstruct_droplet(
                 trace_length=trace_length,
                 sampling_distance=sampling_distance,
                 interpolation_method=interpolation_method,
+                remove_outliers=remove_outliers,
+                outlier_tolerance=outlier_tolerance,
             )
         )
         points = traced_points[0]
@@ -372,7 +372,6 @@ def reconstruct_droplet(
         "blending": "additive",
         "scale": [target_voxelsize] * 3,
     }
-    layer_rescaled_image = (rescaled_image, properties, "image")
 
     if return_intermediate_results:
         return [
@@ -381,7 +380,6 @@ def reconstruct_droplet(
             traced_points,
             trace_vectors,
             droplet_center,
-            layer_rescaled_image,
         ]
     else:
         return [

src/napari_stress/_reconstruction/toolbox.ui

@@ -70,15 +70,15 @@
    <item row="1" column="0" colspan="2">
     <widget class="QToolBox" name="toolBox">
      <property name="currentIndex">
-      <number>2</number>
+      <number>1</number>
      </property>
      <widget class="QWidget" name="page_3">
       <property name="geometry">
        <rect>
         <x>0</x>
         <y>0</y>
         <width>855</width>
-        <height>236</height>
+        <height>258</height>
        </rect>
       </property>
       <attribute name="label">
@@ -174,7 +174,7 @@
         <x>0</x>
         <y>0</y>
         <width>855</width>
-        <height>236</height>
+        <height>258</height>
        </rect>
       </property>
       <attribute name="label">
@@ -194,34 +194,21 @@
          </property>
         </widget>
        </item>
-       <item row="1" column="3">
-        <widget class="QSpinBox" name="spinBox_n_vertices">
-         <property name="minimum">
-          <number>64</number>
-         </property>
-         <property name="maximum">
-          <number>4096</number>
-         </property>
-         <property name="value">
-          <number>256</number>
-         </property>
-        </widget>
-       </item>
-       <item row="2" column="1" colspan="2">
-        <widget class="QLabel" name="label_2">
+       <item row="0" column="1">
+        <widget class="QLabel" name="label_16">
          <property name="text">
-          <string>Surface smoothing iterations</string>
+          <string>Image smoothing sigma</string>
          </property>
         </widget>
        </item>
-       <item row="0" column="1">
-        <widget class="QLabel" name="label_16">
+       <item row="1" column="1" colspan="2">
+        <widget class="QLabel" name="label">
          <property name="text">
-          <string>Image smoothing sigma</string>
+          <string>Initial number of points</string>
          </property>
         </widget>
        </item>
-       <item row="3" column="2">
+       <item row="2" column="2">
         <spacer name="verticalSpacer">
          <property name="orientation">
           <enum>Qt::Vertical</enum>
@@ -234,17 +221,16 @@
          </property>
         </spacer>
        </item>
-       <item row="2" column="3">
-        <widget class="QSpinBox" name="spinBox_n_smoothing">
-         <property name="value">
-          <number>15</number>
+       <item row="1" column="3">
+        <widget class="QSpinBox" name="spinBox_n_vertices">
+         <property name="minimum">
+          <number>64</number>
          </property>
-        </widget>
-       </item>
-       <item row="1" column="1" colspan="2">
-        <widget class="QLabel" name="label">
-         <property name="text">
-          <string>Initial number of points</string>
+         <property name="maximum">
+          <number>4096</number>
+         </property>
+         <property name="value">
+          <number>256</number>
          </property>
         </widget>
        </item>
@@ -255,8 +241,8 @@
        <rect>
         <x>0</x>
         <y>0</y>
-        <width>855</width>
-        <height>408</height>
+        <width>838</width>
+        <height>348</height>
        </rect>
       </property>
       <attribute name="label">
@@ -484,7 +470,6 @@
   <tabstop>doubleSpinBox_target_voxelsize</tabstop>
   <tabstop>doubleSpinBox_gaussian_blur</tabstop>
   <tabstop>spinBox_n_vertices</tabstop>
-  <tabstop>spinBox_n_smoothing</tabstop>
   <tabstop>spinBox_n_refinement_steps</tabstop>
   <tabstop>doubleSpinBox_sampling_length</tabstop>
   <tabstop>comboBox_fittype</tabstop>