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Missing line continuation
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scripts/analysisWGS.sh

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@@ -341,7 +341,7 @@ do_parallel[CaVEMan]="caveman.pl \
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-c $SNVFLAG \
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-f $REF_BASE/caveman/flagging/flag.to.vcf.convert.ini \
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-e $CAVESPLIT \
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-o $OUTPUT_DIR/${PROTOCOL}_${NAME_MT}_vs_${NAME_WT}/caveman
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-o $OUTPUT_DIR/${PROTOCOL}_${NAME_MT}_vs_${NAME_WT}/caveman \
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-k $NORM_CONTAM \
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-no-flagging"
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