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Spatially resolved transcriptomics is a cutting-edge molecular profiling technology that measures transcript expression and position within a tissue. This course will teach you how to analyze spatial transcriptomics data generated by the Visium 10X platform. By the end of this course, you will be able to:

  • Describe different spatial transcriptomics technologies and the best uses of each.
  • Identify important elements for good experimental design.
  • Analyze spatial transcriptomics data, including quality control, transcript quantification, and cell-type assignment within regions.

Prerequisites

To succeed in this course, you need to have

  1. proficiency in the R programming language;
  2. knowledge of bulk RNA and single-cell sequence analysis.