SFARI ARC - Pagan Lab Conversion Progress

[weiglszonja]

Pagan Lab Conversion Progress

123/332 hrs

Pre-Conversion

• Repo Setup
• Initial Inspection and Notes: Delineation of Projects, Experiments and Data Streams
• Identify and request missing data/metadata/READMEs

Collected data streams

• BControl data (.mat)
• Raw ephys in SpikeGadgets format (data collection not started yet)
• Behavioral Video recordings (data collection not started yet)

Conversion

Behavior

• Add BControl conversion #2 (uses ndx-structured-behavior)
• VideoInterface (data has not been collected yet)

Ephys

• SpikeGadgetsRecordingInterface (data has not been collected yet)

Temporal alignment

• Align ephys and behavior (data has not been collected yet)

Spyglass Compatibility

• Add spyglass compatibility #3
• Support for Bcontrol data Support for structured behavioral data LorenFrankLab/spyglass#1343

Post-converion

• Setup Dandiset
• Inspection/Validation
• README/Documentation
• Example notebook Add tutorial notebook #4 and on dandi/example-notebooks (to be added)
• Final meeting

Resources, notes

• Related paper with similar task
• Bcontrol code from Brody Lab
• BEADL notebook: https://github.com/rly/ndx-structured-behavior/blob/main/docs/tutorials/babl_example_notebook.ipynb