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Make content of resource/ world writeable in Docker #183

@DrYak

Description

@DrYak

Describe the bug

some container platform (e.g. Singularity) do not always run as "root" within the container.
this prevents writing into resource/ e.g. when indexing reference sequence

see:

To Reproduce

  • V-pipe used with a virus base config (with built-in reference in resources/)
  • Singularity configured to pass-through username.
  • rule ref_bwa_index crashes as the reference FASTA in resources/ belongs to root, not to the username that gets passed through.

Expected behavior

  • V-pipe should index the reference in resource/

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