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rendercanvas from pypi (#19)
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‎README.md‎

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```sh
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uv pip install "oz-viewer[examples] @ git+https://github.com/kevinyamauchi/oz-viewer.git"
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# if you want to try the Jupyter Lab viewer, install rendercanvas from main
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uv pip install git+https://github.com/pygfx/rendercanvas.git
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```
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## Download dataset

‎examples/orthoviewer.ipynb‎

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"- **Right dock** — volume transparency mode / opacity and slice-overlay opacity.\n",
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"- **2D panels** — pan (left-drag), zoom (scroll), a slice slider below each\n",
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" canvas; the colored slice planes in the 3D panel follow them.\n",
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"- **3D panel** — orbit (left-drag), zoom (scroll), pan (right-drag).\n",
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"\n",
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"**Setup.** From the repo root, install the example extras into the environment\n",
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"(the anywidget canvas backend currently needs `rendercanvas` from git main):\n",
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"\n",
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"```bash\n",
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"VIRTUAL_ENV=.venv uv pip install -e '.[examples]'\n",
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"VIRTUAL_ENV=.venv uv pip install \"rendercanvas @ git+https://github.com/pygfx/rendercanvas.git\"\n",
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"```\n"
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"- **3D panel** — orbit (left-drag), zoom (scroll), pan (right-drag).\n"
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]
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},
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{
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"metadata": {},
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"cell_type": "code",
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"outputs": [],
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"execution_count": null,
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"source": "",
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"id": "693e87f28d733b75"
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},
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{
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"cell_type": "code",
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"execution_count": 1,

‎examples/viewer.ipynb‎

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"- **Left dock** — per-channel colormap, contrast limits, opacity, visibility.\n",
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"- **Bottom dock** — toggle 2D / 3D.\n",
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"- **2D mode** — pan (left-drag), zoom (scroll), z-slice slider below the canvas.\n",
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"- **3D mode** — orbit (left-drag), zoom (scroll), pan (right-drag).\n",
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"\n",
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"**Setup.** From the repo root, install the example extras into the environment\n",
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"(the anywidget canvas backend currently needs `rendercanvas` from git main):\n",
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"\n",
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"```bash\n",
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"VIRTUAL_ENV=.venv uv pip install -e '.[examples]'\n",
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"VIRTUAL_ENV=.venv uv pip install \"rendercanvas @ git+https://github.com/pygfx/rendercanvas.git\"\n",
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"```\n"
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"- **3D mode** — orbit (left-drag), zoom (scroll), pan (right-drag).\n"
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]
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},
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{
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"</pre>\n"
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],
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"text/plain": [
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"\u001b[3m OME-Zarr \u001b[0m\n",
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"\u001b[3m \u001b[0m\u001b[2;3mfile:///Users/ky/Documents/code/oz-viewer/examples/cells3d.ome.zarr\u001b[0m\u001b[3m \u001b[0m\n",
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"\u001b[1;36m \u001b[0m\u001b[1;36mdtype \u001b[0m\u001b[1;36m \u001b[0m uint16 \n",
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"\u001b[1;36m \u001b[0m\u001b[1;36maxes \u001b[0m\u001b[1;36m \u001b[0m c z y x \n",
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"\u001b[1;36m \u001b[0m\u001b[1;36munits \u001b[0m\u001b[1;36m \u001b[0m None micrometer micrometer micrometer \n",
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"\u001b[1;36m \u001b[0m\u001b[1;36mlevels \u001b[0m\u001b[1;36m \u001b[0m 3 \n",
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"\u001b[1;36m \u001b[0m\u001b[1;36m level 0 \u001b[0m\u001b[1;36m \u001b[0m [2, 60, 256, 256] \n",
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"\u001b[1;36m \u001b[0m\u001b[1;36m level 1 \u001b[0m\u001b[1;36m \u001b[0m [2, 60, 128, 128] \n",
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"\u001b[1;36m \u001b[0m\u001b[1;36m level 2 \u001b[0m\u001b[1;36m \u001b[0m [2, 60, 64, 64] \n",
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"\u001b[1;36m \u001b[0m\u001b[1;36mscale (spatial) \u001b[0m\u001b[1;36m \u001b[0m 0.29 0.26 0.26 \n",
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"\u001b[1;36m \u001b[0m\u001b[1;36mworld extents (spatial)\u001b[0m\u001b[1;36m \u001b[0m 17.4 66.56 66.56 \n",
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"\u001b[1;36m \u001b[0m\u001b[1;36mdepth range \u001b[0m\u001b[1;36m \u001b[0m near=1.00 far=666 \n"
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"\u001B[3m OME-Zarr \u001B[0m\n",
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"\u001B[3m \u001B[0m\u001B[2;3mfile:///Users/ky/Documents/code/oz-viewer/examples/cells3d.ome.zarr\u001B[0m\u001B[3m \u001B[0m\n",
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"\u001B[1;36m \u001B[0m\u001B[1;36mdtype \u001B[0m\u001B[1;36m \u001B[0m uint16 \n",
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"\u001B[1;36m \u001B[0m\u001B[1;36maxes \u001B[0m\u001B[1;36m \u001B[0m c z y x \n",
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"\u001B[1;36m \u001B[0m\u001B[1;36munits \u001B[0m\u001B[1;36m \u001B[0m None micrometer micrometer micrometer \n",
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"\u001B[1;36m \u001B[0m\u001B[1;36mlevels \u001B[0m\u001B[1;36m \u001B[0m 3 \n",
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"\u001B[1;36m \u001B[0m\u001B[1;36m level 0 \u001B[0m\u001B[1;36m \u001B[0m [2, 60, 256, 256] \n",
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"\u001B[1;36m \u001B[0m\u001B[1;36m level 1 \u001B[0m\u001B[1;36m \u001B[0m [2, 60, 128, 128] \n",
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"\u001B[1;36m \u001B[0m\u001B[1;36m level 2 \u001B[0m\u001B[1;36m \u001B[0m [2, 60, 64, 64] \n",
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"\u001B[1;36m \u001B[0m\u001B[1;36mscale (spatial) \u001B[0m\u001B[1;36m \u001B[0m 0.29 0.26 0.26 \n",
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"\u001B[1;36m \u001B[0m\u001B[1;36mworld extents (spatial)\u001B[0m\u001B[1;36m \u001B[0m 17.4 66.56 66.56 \n",
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"\u001B[1;36m \u001B[0m\u001B[1;36mdepth range \u001B[0m\u001B[1;36m \u001B[0m near=1.00 far=666 \n"
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]
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},
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"metadata": {},

‎pyproject.toml‎

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"typer >= 0.12",
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"rich >= 13",
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"numpy >= 1.24",
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"cellier[pyside,anywidget]>=0.0.25",
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"cellier[pyside,anywidget]>=0.0.26",
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"aiohttp >= 3.9",
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"zarr >= 3.0",
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"s3fs",

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