Improve only_integrate workflow

cakirb · cakirb · commit be85b4847a1d · 2025-03-31T22:07:54.000+01:00
diff --git a/main.nf b/main.nf
@@ -246,7 +246,8 @@ workflow until_integrate {
 }
 
 workflow only_integrate {
-  integrate(params.path_for_scvi, params.batch_key)
+  obj_scvi = Channel.fromPath("${params.path_for_scvi}")
+  integrate(obj_scvi, params.batch_key)
 }
 
 workflow subset {

Original file line number	Diff line number	Diff line change
`@@ -246,7 +246,8 @@ workflow until_integrate {`
`246`	`246`	`}`
`247`	`247`
`248`	`248`	`workflow only_integrate {`
`249`		`- integrate(params.path_for_scvi, params.batch_key)`
	`249`	`+ obj_scvi = Channel.fromPath("${params.path_for_scvi}")`
	`250`	`+ integrate(obj_scvi, params.batch_key)`
`250`	`251`	`}`
`251`	`252`
`252`	`253`	`workflow subset {`