cfde-galaxy-playbook/playbook-galaxy.yaml at main · cfde-cwic/cfde-galaxy-playbook · GitHub

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---
# Install/Manage Galaxy

- name: Galaxy
  hosts: galaxy_servers
  pre_tasks:
    - name: Create local tools dir
      file:
        path: "{{ galaxy_local_tools_dir }}"
        state: directory
        mode: "0755"
      when: galaxy_local_tools is defined
    - name: Create additional directories
      file:
        path: "{{ item }}"
        state: directory
        mode: "0755"
      become: true
      become_user: "{{ galaxy_user }}"
      loop:
        - "{{ galaxy_shared_rw_root }}/tmp/apptainer_cache"
        - "{{ galaxy_shared_rw_root }}/tmp/apptainer_tmp"
  roles:
    - role: galaxyproject.galaxy.venv
    - role: galaxyproject.galaxy.clone
    - role: galaxyproject.galaxy.version
    - role: galaxyproject.galaxy.gravity
    - role: galaxyproject.galaxy.config
      tags: config
    - role: galaxyproject.galaxy.dependencies
    - role: galaxyproject.galaxy.state
      become_user: "{{ galaxy_user_name }}"
    - role: galaxyproject.galaxy.database
      become_user: "{{ galaxy_user_name }}"
    - role: galaxyproject.galaxy.client
  post_tasks:
    - name: Remove node_modules
      file:
        path: "{{ galaxy_server_dir }}/client/node_modules"
        state: absent
      diff: false

    - name: Find plugin node_modules
      find:
        paths: "{{ galaxy_server_dir }}/config/plugins"
        recurse: true
        depth: 4    # should get plugins in plugin collection dirs
        patterns: node_modules
        file_type: directory
      register: __galaxy_node_modules_dirs_result

    - debug:
        var: __galaxy_node_modules_dirs_result.files

    - name: Remove plugin node_modules
      file:
        path: "{{ item.path }}"
        state: absent
      loop: "{{ __galaxy_node_modules_dirs_result.files }}"
      diff: false

    - name: Deploy internal tools
      ansible.posix.synchronize:
        src: "{{ galaxy_server_dir }}/tools/"
        dest: "{{ galaxy_config.galaxy.tool_path }}"
        archive: true
        delete: true
      become_user: "{{ galaxy_user }}"
      delegate_to: "{{ inventory_hostname }}"

    - name: Create job_execution venv for galaxy-set-metadata
      ansible.builtin.pip:
        name:
          - pip
          - wheel
        state: latest
        virtualenv: "{{ job_execution_venv }}"
        virtualenv_command: "{{ pip_virtualenv_command }}"
      become_user: "{{ galaxy_user }}"

    - name: Install galaxy-job-execution and extras
      ansible.builtin.pip:
        name: "{{ job_execution_packages }}"
        virtualenv: "{{ job_execution_venv }}"
      become_user: "{{ galaxy_user }}"

    - name: Copy welcome.html
      ansible.builtin.copy:
        src: files/galaxy/static/welcome.html
        dest: "{{ galaxy_static_dir }}/welcome.html"
        mode: "0644"
      tags: welcome