Merge remote-tracking branch 'origin/main' into uermel/affinity_organelles

# Conflicts:
#	ingestion_tools/poetry.lock

Author: uermel

.github/workflows/argus-stack-staging-upsert.yaml

@@ -32,4 +32,4 @@ jobs:
         with:
           appName: cryoet-apiv2
           envName: staging
-          postStackDetails: false
+          postStackDetails: comment

.github/workflows/push-ingestor-build.yaml

@@ -37,7 +37,9 @@ jobs:
           role-duration-seconds: 1200
       - name: Login to Amazon ECR
         id: login-ecr
-        uses: aws-actions/amazon-ecr-login@v1
+        uses: aws-actions/amazon-ecr-login@v2
+        with:
+          mask-password: 'true'
       - name: Checkout code
         uses: actions/checkout@v3
       - name: Docker build & Push

.infra/prod/values.yaml

@@ -2,13 +2,13 @@ stack:
   services:
     apiv2:
       image:
-        tag: sha-3a64fa9
+        tag: sha-b16ba78
       initContainers:
         # Install cerbos policies where the cerbos sidecar can grab them.
         - name: install-cerbos-policies
           image:
             repository: 533267185808.dkr.ecr.us-west-2.amazonaws.com/core-platform/cryoet-data-portal-backend/apiv2/apiv2
-            tag: sha-3a64fa9
+            tag: sha-b16ba78
           command: ["cp", "-r", "./cerbos/", "/var/policies/"]
           volumeMounts:
             - mountPath: /var/policies
@@ -24,7 +24,7 @@ stack:
         - name: run-migrations
           image:
             repository: 533267185808.dkr.ecr.us-west-2.amazonaws.com/core-platform/cryoet-data-portal-backend/apiv2/apiv2
-            tag: sha-3a64fa9
+            tag: sha-b16ba78
           command: ["alembic", "upgrade", "head"]
           resources:
             limits:
@@ -37,7 +37,7 @@ stack:
         - name: gen-keypair
           image:
             repository: 533267185808.dkr.ecr.us-west-2.amazonaws.com/core-platform/cryoet-data-portal-backend/apiv2/apiv2
-            tag: sha-3a64fa9
+            tag: sha-b16ba78
           command: ["bash", "./etc/gen_keys.sh", "/var/keys/"]
           volumeMounts:
             - mountPath: /var/keys

.infra/rdev/Chart.yaml

@@ -2,8 +2,7 @@ apiVersion: v2
 name: stack
 type: application
 version: 1.0.0
-
 dependencies:
   - name: stack
-    version: 2.7.0
+    version: 2.23.1
     repository: https://chanzuckerberg.github.io/argo-helm-charts

.infra/staging/Chart.yaml

@@ -2,8 +2,7 @@ apiVersion: v2
 name: stack
 type: application
 version: 1.0.0
-
 dependencies:
   - name: stack
-    version: 2.7.0
+    version: 2.23.1
     repository: https://chanzuckerberg.github.io/argo-helm-charts

.infra/staging/values.yaml

@@ -2,13 +2,13 @@ stack:
   services:
     apiv2:
       image:
-        tag: sha-3a64fa9
+        tag: sha-b16ba78
       initContainers:
         # Install cerbos policies where the cerbos sidecar can grab them.
         - name: install-cerbos-policies
           image:
             repository: 533267185808.dkr.ecr.us-west-2.amazonaws.com/core-platform/cryoet-data-portal-backend/apiv2/apiv2
-            tag: sha-3a64fa9
+            tag: sha-b16ba78
           command: ["cp", "-r", "./cerbos/", "/var/policies/"]
           volumeMounts:
             - mountPath: /var/policies
@@ -24,7 +24,7 @@ stack:
         - name: run-migrations
           image:
             repository: 533267185808.dkr.ecr.us-west-2.amazonaws.com/core-platform/cryoet-data-portal-backend/apiv2/apiv2
-            tag: sha-3a64fa9
+            tag: sha-b16ba78
           command: ["alembic", "upgrade", "head"]
           resources:
             limits:
@@ -37,7 +37,7 @@ stack:
         - name: gen-keypair
           image:
             repository: 533267185808.dkr.ecr.us-west-2.amazonaws.com/core-platform/cryoet-data-portal-backend/apiv2/apiv2
-            tag: sha-3a64fa9
+            tag: sha-b16ba78
           command: ["bash", "./etc/gen_keys.sh", "/var/keys/"]
           volumeMounts:
             - mountPath: /var/keys

.release-please-manifest.json

@@ -1,3 +1,3 @@
 {
-  "apiv2": "1.14.0"
+  "apiv2": "1.15.0"
 }

apiv2/CHANGELOG.md

@@ -1,5 +1,19 @@
 # Changelog
 
+## [1.15.0](https://github.com/chanzuckerberg/cryoet-data-portal-backend/compare/apiv2-v1.14.1...apiv2-v1.15.0) (2026-01-23)
+
+
+### Features
+
+* add support for uberon/chebi ontologies for annotation_object_id; update outdated ontology id fields in apiv2 schema ([#586](https://github.com/chanzuckerberg/cryoet-data-portal-backend/issues/586)) ([a26a6d3](https://github.com/chanzuckerberg/cryoet-data-portal-backend/commit/a26a6d3d84c0f02497a8b43860424604dcc31b87))
+
+## [1.14.1](https://github.com/chanzuckerberg/cryoet-data-portal-backend/compare/apiv2-v1.14.0...apiv2-v1.14.1) (2026-01-23)
+
+
+### Bug Fixes
+
+* update linkml package version, bugfix api codegen, bugfix ingestion validation ([#585](https://github.com/chanzuckerberg/cryoet-data-portal-backend/issues/585)) ([c972d59](https://github.com/chanzuckerberg/cryoet-data-portal-backend/commit/c972d596c10bfa430e820008372b59598a339e3c))
+
 ## [1.14.0](https://github.com/chanzuckerberg/cryoet-data-portal-backend/compare/apiv2-v1.13.2...apiv2-v1.14.0) (2025-11-26)