bump threads to 32 blast nr (#382)

rzlim08 · web-flow · commit 8d57beab9fd6 · 2025-01-30T10:53:21.000-08:00
* bump threads blastx

* linting
diff --git a/lib/idseq-dag/idseq_dag/steps/blast_contigs.py b/lib/idseq-dag/idseq_dag/steps/blast_contigs.py
@@ -346,7 +346,7 @@ def run_blast_nr(blast_index_path, blast_m8, assembled_contig, reference_fasta,
                     "-num_alignments",
                     5,
                     "-num_threads",
-                    16
+                    32  # blastx times out occasionally so bumping to 32
                 ]
             )
         )

Original file line number	Diff line number	Diff line change
`@@ -346,7 +346,7 @@ def run_blast_nr(blast_index_path, blast_m8, assembled_contig, reference_fasta,`
`346`	`346`	`"-num_alignments",`
`347`	`347`	`5,`
`348`	`348`	`"-num_threads",`
`349`		`- 16`
	`349`	`+ 32 # blastx times out occasionally so bumping to 32`
`350`	`350`	`]`
`351`	`351`	`)`
`352`	`352`	`)`