refactor: relocating modules to fit the directory structure (#672)

Summary:
Relocating modules to fit the directory structure

Author: shlomnissan

examples/volume_rendering/main.ts

@@ -3,7 +3,7 @@ import GUI from "lil-gui";
 import { Idetik, OmeZarrImageSource, PerspectiveCamera, VolumeLayer } from "@";
 import { createExplorationPolicy } from "@/core/image_source_policy";
 import { OrbitControls } from "@/objects/cameras/orbit_controls";
-import type { ChannelProps } from "@/objects/textures/channel";
+import type { ChannelProps } from "@/core/channel";
 
 const url =
   "https://public.czbiohub.org/organelle_box/datasets/A549/organelle_box_crop_v1.zarr/CLTA/PFA/002000/";

src/objects/textures/channel.ts src/core/channel.tssrc/objects/textures/channel.ts renamed to src/core/channel.ts

@@ -1,12 +1,9 @@
-// TODO: move this file out of `textures`
-import { Color, ColorLike } from "../../core/color";
-import {
-  Texture,
-  textureDefaultValueRange,
-} from "../../objects/textures/texture";
-import { MAX_CHANNELS } from "../../core/constants";
-import { Logger } from "../../utilities/logger";
-import { clamp } from "../../utilities/clamp";
+import { Color, ColorLike } from "../math/color";
+import { Texture, textureDefaultValueRange } from "../objects/textures/texture";
+import { Logger } from "../utilities/logger";
+import { clamp } from "../utilities/clamp";
+
+const MAX_CHANNELS = 32;
 
 export type Channel = {
   visible: boolean;

src/core/constants.ts

@@ -2,9 +2,9 @@ import { Node } from "../core/node";
 import { Geometry } from "../core/geometry";
 import { WireframeGeometry } from "../core/wireframe_geometry";
 import { Texture } from "../objects/textures/texture";
-import { TrsTransform } from "../core/transforms";
+import { TrsTransform } from "../math/transforms";
 import { Shader } from "../renderers/shaders";
-import { Color } from "../core/color";
+import { Color } from "../math/color";
 import { CullingMode } from "../renderers/webgl_state";
 
 export abstract class RenderableObject extends Node {

src/core/renderable_object.ts

@@ -1,5 +1,5 @@
 import { Camera } from "../objects/cameras/camera";
-import { Color, ColorLike } from "./color";
+import { Color, ColorLike } from "../math/color";
 import { Layer } from "./layer";
 import { Viewport } from "./viewport";
 

src/core/renderer.ts

@@ -1,13 +1,13 @@
-import { ChunkSource } from "../data/chunk";
-import { ChunkQueue } from "../data/chunk_queue";
+import { ChunkSource } from "./chunk";
+import { ChunkQueue } from "./chunk_queue";
 
 export type QueueStats = {
   pending: number;
   running: number;
 };
 import { ChunkStore } from "./chunk_store";
 import { ChunkStoreView } from "./chunk_store_view";
-import { ImageSourcePolicy } from "./image_source_policy";
+import { ImageSourcePolicy } from "../core/image_source_policy";
 
 export class ChunkManager {
   private readonly stores_ = new Map<ChunkSource, ChunkStore>();

src/core/chunk_manager.ts src/data/chunk_manager.tssrc/core/chunk_manager.ts renamed to src/data/chunk_manager.ts

@@ -1,8 +1,8 @@
-import { Chunk, SourceDimensionMap, ChunkLoader } from "../data/chunk";
+import { Chunk, SourceDimensionMap, ChunkLoader } from "./chunk";
 import { almostEqual } from "../utilities/almost_equal";
 import { Logger } from "../utilities/logger";
 import { ChunkStoreView } from "./chunk_store_view";
-import { ImageSourcePolicy } from "./image_source_policy";
+import { ImageSourcePolicy } from "../core/image_source_policy";
 
 export class ChunkStore {
   // Chunks indexed as chunks_[lod][t][c][z][y][x].

src/core/chunk_store.ts src/data/chunk_store.tssrc/core/chunk_store.ts renamed to src/data/chunk_store.ts

@@ -1,13 +1,8 @@
-import {
-  Chunk,
-  SliceCoordinates,
-  ChunkViewState,
-  coordToIndex,
-} from "../data/chunk";
+import { Chunk, SliceCoordinates, ChunkViewState, coordToIndex } from "./chunk";
 import type { ChunkStore } from "./chunk_store";
-import { Viewport } from "./viewport";
+import { Viewport } from "../core/viewport";
 import { OrthographicCamera } from "../objects/cameras/orthographic_camera";
-import { ImageSourcePolicy } from "./image_source_policy";
+import { ImageSourcePolicy } from "../core/image_source_policy";
 import { ReadonlyVec2, vec2, vec3, mat4 } from "gl-matrix";
 import { Box2 } from "../math/box2";
 import { Box3 } from "../math/box3";

src/core/chunk_store_view.ts src/data/chunk_store_view.tssrc/core/chunk_store_view.ts renamed to src/data/chunk_store_view.ts

@@ -1,7 +1,7 @@
 import { WebGLRenderer } from "./renderers/webgl_renderer";
 import { createWebGPURenderer } from "./renderers/webgpu/webgpu_renderer";
 import { Logger } from "./utilities/logger";
-import { ChunkManager } from "./core/chunk_manager";
+import { ChunkManager } from "./data/chunk_manager";
 import { Renderer } from "./core/renderer";
 import { createStats, type Stats } from "./utilities/stats";
 import {

src/idetik.ts

@@ -25,7 +25,7 @@ export { ImageLayer } from "./layers/image_layer";
 export type { ImageLayerProps } from "./layers/image_layer";
 export { VolumeLayer } from "./layers/volume_layer";
 export type { Chunk, ChunkLoader, SliceCoordinates } from "./data/chunk";
-export type { QueueStats } from "./core/chunk_manager";
+export type { QueueStats } from "./data/chunk_manager";
 export { LabelLayer } from "./layers/label_layer";
 export type { LabelLayerProps } from "./layers/label_layer";
 export type { LabelColorMapProps } from "./objects/renderable/label_color_map";
@@ -63,9 +63,9 @@ export type {
   OmeroChannel,
 } from "./data/ome_zarr/metadata_loaders";
 
-export { Color } from "./core/color";
-export type { ColorLike } from "./core/color";
-export type { ChannelProps, ChannelsEnabled } from "./objects/textures/channel";
+export { Color } from "./math/color";
+export type { ColorLike } from "./math/color";
+export type { ChannelProps, ChannelsEnabled } from "./core/channel";
 
 export { Points } from "./objects/renderable/points";
 export { Texture2DArray } from "./objects/textures/texture_2d_array";