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Fix for tests
1 parent 43aa267 commit eae2be1

4 files changed

Lines changed: 22 additions & 3 deletions

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client/src/actions/geneset.ts

Lines changed: 7 additions & 0 deletions
Original file line numberDiff line numberDiff line change
@@ -99,6 +99,10 @@ export const genesetDeleteGenes =
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// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
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(genesetName: any, geneSymbols: any) => (dispatch: any, getState: any) => {
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const state = getState();
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// console.log(geneSymbols);
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// console.log("genesetName", genesetName);
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const obsCrossfilter = dropGeneset(
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dispatch,
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state,
@@ -166,6 +170,9 @@ function dropGeneset(
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geneSymbols: any
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) {
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const { obsCrossfilter: prevObsCrossfilter } = state;
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console.log("genesetName", genesetName);
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console.log("geneSymbols", geneSymbols);
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const obsCrossfilter = geneSymbols.reduce(
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// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
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(crossfilter: any, gene: any) =>

client/src/components/RightSideBar/components/GeneExpression/components/Gene/Gene.tsx

Lines changed: 13 additions & 1 deletion
Original file line numberDiff line numberDiff line change
@@ -187,7 +187,19 @@ class Gene extends React.Component<Props, State> {
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handleDeleteGeneFromSet = (): void => {
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const { dispatch, gene, geneset } = this.props;
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dispatch(actions.genesetDeleteGenes(geneset, [gene.name]));
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console.log(
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"Deleting gene from geneset:",
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gene.name,
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"in geneset:",
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geneset
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);
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const isDEGeneSet = geneset ? geneset.startsWith("Pop") : false;
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const nameToDelete = isDEGeneSet ? gene.id : gene.name;
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dispatch(actions.genesetDeleteGenes(geneset, [nameToDelete]));
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};
192204

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handleOpenMultiomeViz = (): void => {

server/tests/unit/common/config/__init__.py

Lines changed: 1 addition & 1 deletion
Original file line numberDiff line numberDiff line change
@@ -93,7 +93,7 @@ def custom_app_config(
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inline_scripts=None,
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about_legal_tos="null",
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about_legal_privacy="null",
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max_categories=1000,
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max_categories=30000,
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custom_colors="true",
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enable_users_annotations="true",
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annotation_type="local_file_csv",

server/tests/unit/common/config/test_dataset_config.py

Lines changed: 1 addition & 1 deletion
Original file line numberDiff line numberDiff line change
@@ -34,7 +34,7 @@ def get_config(self, **kwargs):
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def test_init_datatset_config_sets_vars_from_default_config(self):
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app_config = AppConfig()
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self.assertEqual(app_config.default_dataset__presentation__max_categories, 1000)
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self.assertEqual(app_config.default_dataset__presentation__max_categories, 30000)
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self.assertEqual(app_config.default_dataset__diffexp__lfc_cutoff, 0.01)
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def test_app_sets_script_vars(self):

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