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Change Log

All notable changes to this project will be documented in this file.

Changed

[0.5.6] - 2020-12-04

Changed

  • Allowing multiple sgRNAs to be annotated in one library
  • Separate additional-rra-mle-parameter into two entries (additional-mle-parameter and additional-rra-parameter) in config.yaml.

[0.5.5] - 2020-09-04

Changed

  • Add indicator to whether turn on sgRNA annotation
  • A BED file indicating the log fold change for each sgRNA is generated, When annotation is turned on and either 1) it's an RRA experiment or 2) a day0 label is specified
  • Simplify rules for vispr for paired-end read support

Added

  • Add annotation support for MAGeCK-VISPR to add custom values in the bed file
  • Add copy number variation (CNV) correction support

[0.5.3] - 2016-09-08

Changed

  • Prefer mle rule over rra if design matrix is present.

[0.5.1] - 2016-03-10

Added

  • It is now possible to activate batch effect correction via combat/sva. The mechanism is described in the example config file that is obtained via "mageck-vispr init".