rf: Encapsulate BIDS schema loading and thread through indexer #140

	name: CI

	on:
	push:
	branches: ["main"]
	pull_request:
	branches: ["main"]

	env:
	UV_FROZEN: true

	jobs:
	format:
	runs-on: ubuntu-latest
	steps:
	- uses: actions/checkout@v4
	with:
	submodules: "true"
	- name: Install uv
	uses: astral-sh/setup-uv@v5
	with:
	pyproject-file: pyproject.toml
	- name: Install the project
	run: uv sync --all-extras
	- name: Check quality
	run: \|
	uv run ruff check bids2table tests
	uv run ruff format --check bids2table tests

	tests:
	runs-on: ubuntu-latest
	needs: format
	strategy:
	matrix:
	python-version: ["3.11", "3.12", "3.13"]
	steps:
	- uses: actions/checkout@v4
	with:
	submodules: "true"
	- name: Install uv with python version
	uses: astral-sh/setup-uv@v6
	with:
	python-version: ${{ matrix.python-version }}

	- name: Run tests without cloudpathlib
	run: \|
	uv run pytest tests
	- name: Run tests with cloudpathlib
	run: \|
	uv run --all-extras pytest \
	--junitxml=pytest.xml \
	--cov-report=xml:coverage.xml \
	--cov=bids2table tests
	- name: Upload coverage to Codecov
	uses: codecov/codecov-action@v4
	with:
	token: ${{ secrets.CODECOV_TOKEN }}

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