Update CI cov #142

	name: CI

	on:
	push:
	branches: [ "main" ]
	pull_request:
	branches: [ "main" ]

	env:
	UV_FROZEN: true
	COVERAGE_PYTHON: "3.12"

	jobs:
	format:
	runs-on: ubuntu-latest
	steps:
	- uses: actions/checkout@v6
	with:
	submodules: "true"
	- uses: astral-sh/setup-uv@v8.1.0
	- run: uv sync --all-extras
	- name: Check quality
	run: \|
	uv run ruff check bids2table tests
	uv run ruff format --check bids2table tests

	tests:
	runs-on: ubuntu-latest
	needs: format
	strategy:
	matrix:
	python-version: [ "3.11", "3.12", "3.13", "3.14" ]
	steps:
	- uses: actions/checkout@v6
	with:
	submodules: "true"
	- uses: astral-sh/setup-uv@v8.1.0
	with:
	python-version: ${{ matrix.python-version }}

	- name: Run tests without cloudpathlib
	run: \|
	uv run pytest \
	-m "not cloud" \
	--junitxml=pytest-cloudless.xml \
	--cov-report=xml:coverage.xml \
	--cov bids2table \
	tests

	- name: Run tests with cloudpathlib
	run: \|
	uv run --extra cloud pytest \
	-m "cloud" \
	--junitxml=pytest-cloud.xml \
	--cov-report=xml:coverage.xml \
	--cov=bids2table \
	--cov-append \
	tests

	- name: Merge JUnit XML reports
	run: \|
	uvx junitparser merge \
	pytest-cloudless.xml \
	pytest-cloud.xml \
	pytest.xml

	- name: Pytest coverage comment
	if: github.event_name == 'pull_request' && matrix.python-version ==
	env.COVERAGE_PYTHON
	uses: MishaKav/pytest-coverage-comment@v1
	with:
	pytest-xml-coverage-path: ./coverage.xml
	junitxml-path: ./pytest.xml

Provide feedback