Fix longitudinal functional template #870
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| name: CI | |
| permissions: | |
| contents: read | |
| pull-requests: write | |
| on: | |
| push: | |
| branches: | |
| - main | |
| pull_request: | |
| workflow_dispatch: | |
| jobs: | |
| unit: | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: [ubuntu-latest, macos-latest, windows-latest] | |
| steps: | |
| - uses: actions/checkout@v6 | |
| - uses: astral-sh/setup-uv@v8.0.0 | |
| - run: uv sync | |
| - name: Run non-ubuntu quick tests | |
| if: matrix.os != 'ubuntu-latest' | |
| shell: bash | |
| run: > | |
| uv run pytest \ | |
| -m "unit" \ | |
| --junitxml=pytest.xml \ | |
| --cov=src \ | |
| --log-level=DEBUG \ | |
| --verbose tests | |
| - name: Run ubuntu quick tests | |
| if: matrix.os == 'ubuntu-latest' | |
| shell: bash | |
| run: > | |
| uv run pytest \ | |
| -m "not slow and not full_pipeline" \ | |
| --junitxml=pytest.xml \ | |
| --cov=src \ | |
| --cov-report=xml \ | |
| --log-level=DEBUG \ | |
| --verbose tests | |
| - name: Pytest coverage comment | |
| if: matrix.os == 'ubuntu-latest' && github.event_name == 'pull_request' | |
| uses: MishaKav/pytest-coverage-comment@v1 | |
| with: | |
| pytest-xml-coverage-path: ./coverage.xml | |
| junitxml-path: ./pytest.xml | |
| codegen: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v6 | |
| - uses: astral-sh/setup-uv@v8.0.0 | |
| - run: uv sync | |
| - name: Check generated files are up-to-date | |
| run: | | |
| uv run scripts/generate_bids_tools.py | |
| git diff --exit-code || (echo "Generated files are out of date. Run: uv run scripts/generate_bids_tools.py" && exit 1) | |
| ruff: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v6 | |
| - uses: astral-sh/setup-uv@v8.0.0 | |
| - run: uv sync --only-dev | |
| - name: Ruff format | |
| run: uv run ruff format --check | |
| - name: Ruff check | |
| run: uv run ruff check | |
| mypy: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v6 | |
| - uses: astral-sh/setup-uv@v8.0.0 | |
| - run: uv sync | |
| - run: uv run mypy . | |
| deptry: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v6 | |
| - uses: astral-sh/setup-uv@v8.0.0 | |
| - run: uv sync | |
| - run: uv run deptry ./src |