rbc/.github/workflows/test.yaml at 4b02479fb9bf7a5dc2d15e31604ad62e450736a2 · childmindresearch/rbc · GitHub

1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
name: CI

permissions:
  contents: read
  pull-requests: write

on:
  push:
    branches:
    - main
  pull_request:
  workflow_dispatch:

jobs:
  unit:
    runs-on: ${{ matrix.os }}
    strategy:
      fail-fast: false
      matrix:
        os: [ubuntu-latest, macos-latest, windows-latest]
    steps:
    - uses: actions/checkout@v6
    - uses: astral-sh/setup-uv@v8.1.0
    - run: uv sync

    - name: Run non-ubuntu quick tests
      if: matrix.os != 'ubuntu-latest'
      shell: bash
      run: >
        uv run pytest \
          -m "unit" \
          --junitxml=pytest.xml \
          --cov=src \
          --log-level=DEBUG \
          --verbose tests

    - name: Run ubuntu quick tests
      if: matrix.os == 'ubuntu-latest'
      shell: bash
      run: >
        uv run pytest \
          -m "not slow and not full_pipeline" \
          --junitxml=pytest.xml \
          --cov=src \
          --cov-report=xml \
          --log-level=DEBUG \
          --verbose tests

    - name: Pytest coverage comment
      if: matrix.os == 'ubuntu-latest' && github.event_name == 'pull_request'
      uses: MishaKav/pytest-coverage-comment@v1
      with:
        pytest-xml-coverage-path: ./coverage.xml
        junitxml-path: ./pytest.xml

  codegen:
    runs-on: ubuntu-latest
    steps:
    - uses: actions/checkout@v6
    - uses: astral-sh/setup-uv@v8.1.0
    - run: uv sync
    - name: Check generated files are up-to-date
      run: |
        uv run scripts/generate_bids_tools.py
        git diff --exit-code || (echo "Generated files are out of date. Run: uv run scripts/generate_bids_tools.py" && exit 1)

  ruff:
    runs-on: ubuntu-latest
    steps:
    - uses: actions/checkout@v6
    - uses: astral-sh/setup-uv@v8.1.0
    - run: uv sync --only-dev
    - name: Ruff format
      run: uv run ruff format --check
    - name: Ruff check
      run: uv run ruff check

  mypy:
    runs-on: ubuntu-latest
    steps:
    - uses: actions/checkout@v6
    - uses: astral-sh/setup-uv@v8.1.0
    - run: uv sync
    - run: uv run mypy .

  deptry:
    runs-on: ubuntu-latest
    steps:
    - uses: actions/checkout@v6
    - uses: astral-sh/setup-uv@v8.1.0
    - run: uv sync
    - run: uv run deptry ./src