Update use of rename in anatomical.py

kaitj · kaitj · commit 0f19cea889e3 · 2026-02-02T09:55:53.000-05:00
diff --git a/src/rbc/workflows/anatomical.py b/src/rbc/workflows/anatomical.py
@@ -43,7 +43,7 @@ def single_session(in_t1w: Path, output_dir: Path) -> None:
         (extracted_t1w.gm_segmentation, "gm", "dseg"),
     ]
     renamed_files = [
-        rename(Path(out_file), str(bids(desc=desc, suffix=suffix, ext=".nii.gz")))
+        rename(out_file, bids(desc=desc, suffix=suffix, ext=".nii.gz"))
         for out_file, desc, suffix in extracted_t1w_outputs
     ]
     niwrap_helper.save(

Original file line number	Diff line number	Diff line change
`@@ -43,7 +43,7 @@ def single_session(in_t1w: Path, output_dir: Path) -> None:`
`43`	`43`	`(extracted_t1w.gm_segmentation, "gm", "dseg"),`
`44`	`44`	`]`
`45`	`45`	`renamed_files = [`
`46`		`- rename(Path(out_file), str(bids(desc=desc, suffix=suffix, ext=".nii.gz")))`
	`46`	`+ rename(out_file, bids(desc=desc, suffix=suffix, ext=".nii.gz"))`
`47`	`47`	`for out_file, desc, suffix in extracted_t1w_outputs`
`48`	`48`	`]`
`49`	`49`	`niwrap_helper.save(`