ruff & longitudinal func smoothing test

Author: jpillai00

src/rbc/bids/longitudinal/functional.py

@@ -15,6 +15,7 @@
     from rbc.bids import Bids
     from rbc.workflows.longitudinal.functional import FunctionalLongOutputs
 
+
 def _smooth_label(fwhm: float, precision: int | None = None) -> str:
     """Format FWHM as a BIDS-safe label (e.g. 6.0 -> 'sm6', 0.1 -> 'sm0p1').
 

src/rbc/cli/longitudinal/functional.py

@@ -5,7 +5,7 @@
 from dataclasses import dataclass
 from typing import TYPE_CHECKING, Literal
 
-from rbc.cli.base import _validate_task, _validate_positive
+from rbc.cli.base import _validate_positive, _validate_task
 from rbc.cli.longitudinal._base import LongitudinalBaseArgs, add_fs_license_argument
 from rbc.orchestration import Filters, RunnerConfig
 from rbc.orchestration.longitudinal.functional import run

src/rbc/workflows/longitudinal/functional.py

@@ -11,8 +11,8 @@
 import logging
 from typing import TYPE_CHECKING, NamedTuple
 
-from rbc.core.functional import apply_regression, apply_regression_bandpass
 from rbc.core.common import smooth as apply_smooth
+from rbc.core.functional import apply_regression, apply_regression_bandpass
 from rbc.core.longitudinal.transform import (
     compose_transform,
     func_transform,
@@ -37,7 +37,7 @@ class FunctionalLongOutputs(NamedTuple):
             in longitudinal template space, keyed by strategy name.
         cleaned_bold: Per-regressor nuisance-regressed + bandpass-filtered
             BOLD in longitudinal template space, keyed by strategy name.
-        cleaned_bold_smooth: Per-regressor spatially smoothed nuisance-regressed 
+        cleaned_bold_smooth: Per-regressor spatially smoothed nuisance-regressed
             + bandpass-filtered in longitudinal template space, or *None*.
     """
 
@@ -120,7 +120,7 @@ def longitudinal_process(
             brain_mask_file=long_mask,
             regressor_file=reg_file,
         ).regressed_bold
-    
+
     # Optionally smooth cleaned BOLD (export-only)
     cleaned_bold_smooth: dict[str, Path] | None = None
     if smooth is not None:
@@ -134,7 +134,7 @@ def longitudinal_process(
                 long_mask,
                 fwhm=smooth,
             )
-            
+
     return FunctionalLongOutputs(
         bold_to_long_xfm=bold_to_tpl_xfm,
         sbref=long_sbref,

tests/unit/bids/test_longitudinal_functional.py

@@ -105,6 +105,10 @@ def _dummy(name: str) -> Path:
             "36-parameter": _dummy("cleaned_36p.nii.gz"),
             "aCompCor": _dummy("cleaned_acompcor.nii.gz"),
         },
+        cleaned_bold_smooth={
+            "36-parameter": _dummy("cleaned_36p_smooth.nii.gz"),
+            "aCompCor": _dummy("cleaned_acompcor_smooth.nii.gz"),
+        },
     )