Initial commit

Author: nx10

CODE_OF_CONDUCT.md

@@ -60,7 +60,7 @@ representative at an online or offline event.
 
 Instances of abusive, harassing, or otherwise unacceptable behavior may be
 reported to the community leaders responsible for enforcement at
-ENTER_YOUR_EMAIL_ADDRESS.
+dair@childmind.org.
 
 All complaints will be reviewed and investigated promptly and fairly.
 

CONTRIBUTING.md

@@ -1,6 +1,6 @@
-# template-python-repository pull request guidelines
+# rbc pull request guidelines
 
-Pull requests are always welcome, and we appreciate any help you give. Note that a code of conduct applies to all spaces managed by the template-python-repository project, including issues and pull requests. Please see the [Code of Conduct](CODE_OF_CONDUCT.md) for details.
+Pull requests are always welcome, and we appreciate any help you give. Note that a code of conduct applies to all spaces managed by the rbc project, including issues and pull requests. Please see the [Code of Conduct](CODE_OF_CONDUCT.md) for details.
 
 When submitting a pull request, we ask you to check the following:
 

LICENSE

@@ -1,6 +1,6 @@
 MIT License
 
-Copyright (c) 2023 Child Mind Institute
+Copyright (c) 2026 CMI DAIR
 
 Permission is hereby granted, free of charge, to any person obtaining a copy
 of this software and associated documentation files (the "Software"), to deal

README.md

@@ -4,7 +4,7 @@
 
 Welcome to the CMI-DAIR Template Python Repository! This template is designed to streamline your project setup and ensure a consistent structure. To get started, follow these steps:
 
-- [ ] Run `setup_template.py` to initialize the repository.
+- [x] Run `setup_template.py` to initialize the repository.
 - [ ] Replace the content of this `README.md` with details specific to your project.
 - [ ] Install the `pre-commit` hooks to ensure code quality on each commit.
 - [ ] Revise SECURITY.md to reflect supported versions or remove it if not applicable.
@@ -15,12 +15,12 @@ Welcome to the CMI-DAIR Template Python Repository! This template is designed to
 
 # Project name
 
-[![Build](https://github.com/childmindresearch/template-python-repository/actions/workflows/test.yaml/badge.svg?branch=main)](https://github.com/childmindresearch/template-python-repository/actions/workflows/test.yaml?query=branch%3Amain)
-[![codecov](https://codecov.io/gh/childmindresearch/template-python-repository/branch/main/graph/badge.svg?token=22HWWFWPW5)](https://codecov.io/gh/childmindresearch/template-python-repository)
+[![Build](https://github.com/childmindresearch/rbc/actions/workflows/test.yaml/badge.svg?branch=main)](https://github.com/childmindresearch/rbc/actions/workflows/test.yaml?query=branch%3Amain)
+[![codecov](https://codecov.io/gh/childmindresearch/rbc/branch/main/graph/badge.svg?token=22HWWFWPW5)](https://codecov.io/gh/childmindresearch/rbc)
 [![Ruff](https://img.shields.io/endpoint?url=https://raw.githubusercontent.com/astral-sh/ruff/main/assets/badge/v2.json)](https://github.com/astral-sh/ruff)
 ![stability-stable](https://img.shields.io/badge/stability-stable-green.svg)
-[![MIT License](https://img.shields.io/badge/license-MIT-blue.svg)](https://github.com/childmindresearch/template-python-repository/blob/main/LICENSE)
-[![pages](https://img.shields.io/badge/api-docs-blue)](https://childmindresearch.github.io/template-python-repository)
+[![MIT License](https://img.shields.io/badge/license-MIT-blue.svg)](https://github.com/childmindresearch/rbc/blob/main/LICENSE)
+[![pages](https://img.shields.io/badge/api-docs-blue)](https://childmindresearch.github.io/rbc)
 
 What problem does this tool solve?
 
@@ -41,7 +41,7 @@ pip install APP_NAME
 Or get the newest development version via:
 
 ```sh
-pip install git+https://github.com/childmindresearch/template-python-repository
+pip install git+https://github.com/childmindresearch/rbc
 ```
 
 ## Quick start

SECURITY.md

@@ -15,6 +15,6 @@ Note which version(s) will receive security updates. For example:
 
 ## Reporting Vulnerabilities
 
-To report security vulnerabilities, please do NOT use our issues page. Instead, kindly email us at ENTER_YOUR_EMAIL_ADDRESS. Please refrain from using other communication channels.
+To report security vulnerabilities, please do NOT use our issues page. Instead, kindly email us at dair@childmind.org. Please refrain from using other communication channels.
 
 For non-security-related issues, we welcome your input and feedback on our issues page. Feel free to share your ideas and suggestions to help us improve our services.

pyproject.toml

@@ -1,14 +1,19 @@
 [project]
-name = "app-name"
+name = "rbc"
 version = "0.1.0"
-description = "A beautiful description."
+description = "Standalone implantations of the RBC protocol for anatomical, functional, derivatives, and longitudinal pre-processing"
 authors = [
   {name = "CMI DAIR", email = "dair@childmind.org"}
 ]
-license = "LGPL-2.1-only"
+license = "MIT"
 readme = "README.md"
 requires-python = ">=3.12"
-dependencies = []
+dependencies = [
+    "nibabel>=5.3.3",
+    "niwrap>=0.8.2",
+    "numpy>=2.4.1",
+    "scipy>=1.17.0",
+]
 
 [dependency-groups]
 dev = [