habenula-abide-rsfc

let's do this habenula thing again .. but better ... like with 1500 hand drawn ROIs

Analysis

We performed a seed-based resting state functional connectiivty analysis in the ABIDE dataset to:

1. Regions of atypical connectivity in individuals diagnosed with ASD compared to neurotypical (NT) controls
2. Regions that exhibit an altered developmental functional connectivity trajectory (age-variability)
3. Phenotypic variability in connectivity between ASD and NT

Visualizations

Must use:

python 3.8, 3.9, 3.10, and 3.11 nilearn 0.10.2 netneurotools 0.2.4

(I personally use Python 3.9.6)

To install the necessary packages:

Install in this order:

1. First install gradec:

   pip install git+https://github.com/JulioAPeraza/gradec.git
   

2. Then install seaborn:

   pip install seaborn
   

3. Install remaining packages:

   pip install numpy pandas matplotlib neuromaps nibabel nilearn==0.10.2 surfplot scipy
   

4. Important: Ensure netneurotools is version 0.2.4:

   pip install netneurotools==0.2.4