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New errors in asap-alchemy #103

@mariacm12

Description

@mariacm12

macos is failing

def test_plan_from_names(tyk2_ligands, tyk2_small_custom_network):
        """Make sure we can plan a network using the names of the ligands."""
        edges = extract_custom_ligand_network(tyk2_small_custom_network)
        planner = NetworkPlanner(network_planning_method=CustomNetworkPlanner(edges=edges))
        network = planner.generate_network(ligands=tyk2_ligands).to_ligand_network()
        # make sure the edges are as we expect
        for edge in network.edges:
>           assert (edge.componentA.name, edge.componentB.name) in edges
E           AssertionError: assert ('', '') in [('lig_ejm_46', 'lig_jmc_23'), ('lig_jmc_23', 'lig_jmc_28'), ('lig_ejm_31', 'lig_ejm_46')]

drugforge-alchemy/drugforge/alchemy/tests/test_fec_schema.py:117: AssertionError

And ubuntu

E       AttributeError: 'FEMap' object has no attribute 'graph'

drugforge-alchemy/drugforge/alchemy/cli/utils.py:304: AttributeError

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