databases-ci #371
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| name: databases-ci | |
| on: | |
| push: | |
| branches: | |
| - "main" | |
| paths: | |
| - "missense_kinase_toolkit/databases/**" | |
| pull_request: | |
| branches: | |
| - "main" | |
| paths: | |
| - "missense_kinase_toolkit/databases/**" | |
| schedule: | |
| - cron: "0 0 * * 0" | |
| jobs: | |
| test: | |
| name: Test on ${{ matrix.os }}, Python ${{ matrix.python-version }} | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| matrix: | |
| os: [macOS-latest, ubuntu-latest, windows-latest] | |
| python-version: ["3.10", "3.11"] | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Additional info about the build | |
| shell: bash | |
| run: | | |
| uname -a | |
| df -h | |
| ulimit -a | |
| - uses: mamba-org/setup-micromamba@v1 | |
| with: | |
| environment-file: devtools/conda-envs/test_env.yaml | |
| environment-name: test | |
| channels: conda-forge,defaults | |
| extra-specs: | | |
| python=${{ matrix.python-version }} | |
| - name: Install package | |
| shell: bash -l {0} | |
| run: | | |
| python -m pip install ./missense_kinase_toolkit/schema --no-deps | |
| python -m pip install ./missense_kinase_toolkit/databases --no-deps | |
| micromamba list | |
| - name: Run tests | |
| shell: bash -l {0} | |
| run: | | |
| set -e | |
| pytest \ | |
| -v \ | |
| --cov-report=xml \ | |
| --color=yes \ | |
| --cov=mkt.databases \ | |
| missense_kinase_toolkit/databases/mkt/databases/tests/ | |
| - name: Upload coverage reports to Codecov | |
| uses: codecov/[email protected] | |
| with: | |
| fail_ci_if_error: false # optional (default = false) | |
| file: ./coverage.xml | |
| flags: databases # optional | |
| name: codecov-${{ matrix.os }}-py${{ matrix.python-version }} | |
| token: ${{ secrets.CODECOV_TOKEN }} # required | |
| verbose: true # optional (default = false) |