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lines changed Original file line number Diff line number Diff line change @@ -99,7 +99,8 @@ def __post_init__(self):
9999 super ().__post_init__ ()
100100 if not self .check_entity_id ():
101101 logger .warning (
102- f"Study { self .get_entity_id ()} not found in cBioPortal instance { self .instance } "
102+ f"Study { self .get_entity_id ()} not found "
103+ f"in cBioPortal instance { self .instance } "
103104 )
104105 if self .pathfile is not None :
105106 try :
@@ -588,7 +589,7 @@ def remove_mismatched_uniprot_mutations(
588589 str_errors = "\n " .join (set_kinase_mismatch )
589590 logger .error (
590591 "HGNC gene names of kinases with mismatches between "
591- f"cBioPortal and canonical Uniprot sequences:\n { str_errors } "
592+ f"cBioPortal and canonical Uniprot sequences:\n { str_errors } "
592593 )
593594 df_filtered = df .loc [
594595 ~ df ["gene_hugoGeneSymbol" ].isin (set_kinase_mismatch ), :
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