release v5.13.0

Author: rjleveque

ClawPlotAxes.html

@@ -5,13 +5,13 @@
     <meta charset="utf-8" />
     <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
 
-    <title>ClawPlotAxes &#8212; Clawpack 5.12.x documentation</title>
+    <title>ClawPlotAxes &#8212; Clawpack 5.13.x documentation</title>
     <link rel="stylesheet" href="_static/base.css" type="text/css" />
     <link rel="stylesheet" href="_static/layout.css" type="text/css" />
     <link rel="stylesheet" type="text/css" href="_static/pygments.css?v=03e43079" />
     <link rel="stylesheet" type="text/css" href="_static/flasky.css?v=59fe8e2d" />
     <link rel="stylesheet" type="text/css" href="_static/graphviz.css?v=4ae1632d" />
-    <script src="_static/documentation_options.js?v=0a6cd0f6"></script>
+    <script src="_static/documentation_options.js?v=7bb99aaf"></script>
     <script src="_static/doctools.js?v=9bcbadda"></script>
     <script src="_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="icon" href="_static/clawicon.ico"/>
@@ -70,7 +70,7 @@ <h3>Navigation</h3>
         <li class="right" >
           <a href="ClawPlotFigure.html" title="ClawPlotFigure"
              accesskey="P">previous</a> |</li>
-        <li class="nav-item nav-item-0"><a href="contents.html">Clawpack 5.12.x documentation</a> &#187;</li>
+        <li class="nav-item nav-item-0"><a href="contents.html">Clawpack 5.13.x documentation</a> &#187;</li>
           <li class="nav-item nav-item-1"><a href="plotting.html" >Plotting with Visclaw</a> &#187;</li>
           <li class="nav-item nav-item-2"><a href="setplot.html" accesskey="U">Using setplot.py to specify the desired plots</a> &#187;</li>
         <li class="nav-item nav-item-this"><a href="">ClawPlotAxes</a></li> 
@@ -416,7 +416,7 @@ <h2>Methods<a class="headerlink" href="#methods" title="Link to this heading">¶
 <p><a href="http://clawpack.org/">
     <img class="logo" src= "_static/clawlogo.jpg" alt="Logo"/>
 </a>
-<h2>Version 5.12.x</h2>
+<h2>Version 5.13.x</h2>
 </p>
   <div>
     <h3><a href="contents.html">Table of Contents</a></h3>
@@ -478,12 +478,13 @@ <h3 id="searchlabel">Quick search</h3>
 <h4>Latest Version</h4>
 <ul>
   <li><a href="./dev/ClawPlotAxes.html">dev</a></li>
-  <li><a href="ClawPlotAxes.html">v5.12.x</a></li>
+  <li><a href="ClawPlotAxes.html">v5.13.x</a></li>
 </ul>
 <h4>Older Versions</h4>
 <ul>
   <li><a href="./v5.10.x/ClawPlotAxes.html">v5.10.x</a></li>
   <li><a href="./v5.11.x/ClawPlotAxes.html">v5.11.x</a></li>
+  <li><a href="./v5.12.x/ClawPlotAxes.html">v5.12.x</a></li>
   <li><a href="./v5.7.x/ClawPlotAxes.html">v5.7.x</a></li>
   <li><a href="./v5.8.x/ClawPlotAxes.html">v5.8.x</a></li>
   <li><a href="./v5.9.x/ClawPlotAxes.html">v5.9.x</a></li>

ClawPlotData.html

@@ -5,13 +5,13 @@
     <meta charset="utf-8" />
     <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
 
-    <title>ClawPlotData &#8212; Clawpack 5.12.x documentation</title>
+    <title>ClawPlotData &#8212; Clawpack 5.13.x documentation</title>
     <link rel="stylesheet" href="_static/base.css" type="text/css" />
     <link rel="stylesheet" href="_static/layout.css" type="text/css" />
     <link rel="stylesheet" type="text/css" href="_static/pygments.css?v=03e43079" />
     <link rel="stylesheet" type="text/css" href="_static/flasky.css?v=59fe8e2d" />
     <link rel="stylesheet" type="text/css" href="_static/graphviz.css?v=4ae1632d" />
-    <script src="_static/documentation_options.js?v=0a6cd0f6"></script>
+    <script src="_static/documentation_options.js?v=7bb99aaf"></script>
     <script src="_static/doctools.js?v=9bcbadda"></script>
     <script src="_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="icon" href="_static/clawicon.ico"/>
@@ -70,7 +70,7 @@ <h3>Navigation</h3>
         <li class="right" >
           <a href="setplot.html" title="Using setplot.py to specify the desired plots"
              accesskey="P">previous</a> |</li>
-        <li class="nav-item nav-item-0"><a href="contents.html">Clawpack 5.12.x documentation</a> &#187;</li>
+        <li class="nav-item nav-item-0"><a href="contents.html">Clawpack 5.13.x documentation</a> &#187;</li>
           <li class="nav-item nav-item-1"><a href="plotting.html" >Plotting with Visclaw</a> &#187;</li>
           <li class="nav-item nav-item-2"><a href="setplot.html" accesskey="U">Using setplot.py to specify the desired plots</a> &#187;</li>
         <li class="nav-item nav-item-this"><a href="">ClawPlotData</a></li> 
@@ -331,7 +331,7 @@ <h2>Methods<a class="headerlink" href="#methods" title="Link to this heading">¶
 <p><a href="http://clawpack.org/">
     <img class="logo" src= "_static/clawlogo.jpg" alt="Logo"/>
 </a>
-<h2>Version 5.12.x</h2>
+<h2>Version 5.13.x</h2>
 </p>
   <div>
     <h3><a href="contents.html">Table of Contents</a></h3>
@@ -401,12 +401,13 @@ <h3 id="searchlabel">Quick search</h3>
 <h4>Latest Version</h4>
 <ul>
   <li><a href="./dev/ClawPlotData.html">dev</a></li>
-  <li><a href="ClawPlotData.html">v5.12.x</a></li>
+  <li><a href="ClawPlotData.html">v5.13.x</a></li>
 </ul>
 <h4>Older Versions</h4>
 <ul>
   <li><a href="./v5.10.x/ClawPlotData.html">v5.10.x</a></li>
   <li><a href="./v5.11.x/ClawPlotData.html">v5.11.x</a></li>
+  <li><a href="./v5.12.x/ClawPlotData.html">v5.12.x</a></li>
   <li><a href="./v5.7.x/ClawPlotData.html">v5.7.x</a></li>
   <li><a href="./v5.8.x/ClawPlotData.html">v5.8.x</a></li>
   <li><a href="./v5.9.x/ClawPlotData.html">v5.9.x</a></li>

ClawPlotFigure.html

@@ -5,13 +5,13 @@
     <meta charset="utf-8" />
     <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
 
-    <title>ClawPlotFigure &#8212; Clawpack 5.12.x documentation</title>
+    <title>ClawPlotFigure &#8212; Clawpack 5.13.x documentation</title>
     <link rel="stylesheet" href="_static/base.css" type="text/css" />
     <link rel="stylesheet" href="_static/layout.css" type="text/css" />
     <link rel="stylesheet" type="text/css" href="_static/pygments.css?v=03e43079" />
     <link rel="stylesheet" type="text/css" href="_static/flasky.css?v=59fe8e2d" />
     <link rel="stylesheet" type="text/css" href="_static/graphviz.css?v=4ae1632d" />
-    <script src="_static/documentation_options.js?v=0a6cd0f6"></script>
+    <script src="_static/documentation_options.js?v=7bb99aaf"></script>
     <script src="_static/doctools.js?v=9bcbadda"></script>
     <script src="_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="icon" href="_static/clawicon.ico"/>
@@ -70,7 +70,7 @@ <h3>Navigation</h3>
         <li class="right" >
           <a href="ClawPlotData.html" title="ClawPlotData"
              accesskey="P">previous</a> |</li>
-        <li class="nav-item nav-item-0"><a href="contents.html">Clawpack 5.12.x documentation</a> &#187;</li>
+        <li class="nav-item nav-item-0"><a href="contents.html">Clawpack 5.13.x documentation</a> &#187;</li>
           <li class="nav-item nav-item-1"><a href="plotting.html" >Plotting with Visclaw</a> &#187;</li>
           <li class="nav-item nav-item-2"><a href="setplot.html" accesskey="U">Using setplot.py to specify the desired plots</a> &#187;</li>
         <li class="nav-item nav-item-this"><a href="">ClawPlotFigure</a></li> 
@@ -181,7 +181,7 @@ <h2>Methods<a class="headerlink" href="#methods" title="Link to this heading">¶
 <p><a href="http://clawpack.org/">
     <img class="logo" src= "_static/clawlogo.jpg" alt="Logo"/>
 </a>
-<h2>Version 5.12.x</h2>
+<h2>Version 5.13.x</h2>
 </p>
   <div>
     <h3><a href="contents.html">Table of Contents</a></h3>
@@ -242,12 +242,13 @@ <h3 id="searchlabel">Quick search</h3>
 <h4>Latest Version</h4>
 <ul>
   <li><a href="./dev/ClawPlotFigure.html">dev</a></li>
-  <li><a href="ClawPlotFigure.html">v5.12.x</a></li>
+  <li><a href="ClawPlotFigure.html">v5.13.x</a></li>
 </ul>
 <h4>Older Versions</h4>
 <ul>
   <li><a href="./v5.10.x/ClawPlotFigure.html">v5.10.x</a></li>
   <li><a href="./v5.11.x/ClawPlotFigure.html">v5.11.x</a></li>
+  <li><a href="./v5.12.x/ClawPlotFigure.html">v5.12.x</a></li>
   <li><a href="./v5.7.x/ClawPlotFigure.html">v5.7.x</a></li>
   <li><a href="./v5.8.x/ClawPlotFigure.html">v5.8.x</a></li>
   <li><a href="./v5.9.x/ClawPlotFigure.html">v5.9.x</a></li>

ClawPlotItem.html

@@ -5,13 +5,13 @@
     <meta charset="utf-8" />
     <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
 
-    <title>ClawPlotItem &#8212; Clawpack 5.12.x documentation</title>
+    <title>ClawPlotItem &#8212; Clawpack 5.13.x documentation</title>
     <link rel="stylesheet" href="_static/base.css" type="text/css" />
     <link rel="stylesheet" href="_static/layout.css" type="text/css" />
     <link rel="stylesheet" type="text/css" href="_static/pygments.css?v=03e43079" />
     <link rel="stylesheet" type="text/css" href="_static/flasky.css?v=59fe8e2d" />
     <link rel="stylesheet" type="text/css" href="_static/graphviz.css?v=4ae1632d" />
-    <script src="_static/documentation_options.js?v=0a6cd0f6"></script>
+    <script src="_static/documentation_options.js?v=7bb99aaf"></script>
     <script src="_static/doctools.js?v=9bcbadda"></script>
     <script src="_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="icon" href="_static/clawicon.ico"/>
@@ -70,7 +70,7 @@ <h3>Navigation</h3>
         <li class="right" >
           <a href="ClawPlotAxes.html" title="ClawPlotAxes"
              accesskey="P">previous</a> |</li>
-        <li class="nav-item nav-item-0"><a href="contents.html">Clawpack 5.12.x documentation</a> &#187;</li>
+        <li class="nav-item nav-item-0"><a href="contents.html">Clawpack 5.13.x documentation</a> &#187;</li>
           <li class="nav-item nav-item-1"><a href="plotting.html" >Plotting with Visclaw</a> &#187;</li>
           <li class="nav-item nav-item-2"><a href="setplot.html" accesskey="U">Using setplot.py to specify the desired plots</a> &#187;</li>
         <li class="nav-item nav-item-this"><a href="">ClawPlotItem</a></li> 
@@ -573,7 +573,7 @@ <h2>Methods<a class="headerlink" href="#methods" title="Link to this heading">¶
 <p><a href="http://clawpack.org/">
     <img class="logo" src= "_static/clawlogo.jpg" alt="Logo"/>
 </a>
-<h2>Version 5.12.x</h2>
+<h2>Version 5.13.x</h2>
 </p>
   <div>
     <h3><a href="contents.html">Table of Contents</a></h3>
@@ -647,12 +647,13 @@ <h3 id="searchlabel">Quick search</h3>
 <h4>Latest Version</h4>
 <ul>
   <li><a href="./dev/ClawPlotItem.html">dev</a></li>
-  <li><a href="ClawPlotItem.html">v5.12.x</a></li>
+  <li><a href="ClawPlotItem.html">v5.13.x</a></li>
 </ul>
 <h4>Older Versions</h4>
 <ul>
   <li><a href="./v5.10.x/ClawPlotItem.html">v5.10.x</a></li>
   <li><a href="./v5.11.x/ClawPlotItem.html">v5.11.x</a></li>
+  <li><a href="./v5.12.x/ClawPlotItem.html">v5.12.x</a></li>
   <li><a href="./v5.7.x/ClawPlotItem.html">v5.7.x</a></li>
   <li><a href="./v5.8.x/ClawPlotItem.html">v5.8.x</a></li>
   <li><a href="./v5.9.x/ClawPlotItem.html">v5.9.x</a></li>

_sources/changes_to_master.rst.txt

@@ -3,12 +3,12 @@
 .. _changes_to_master:
 
 ===============================
-Changes to master since v5.12.0
+Changes to master since v5.13.0
 ===============================
 
 
 Follow the links to see changes that have been made to the master branch of
-each repository since the last release (v5.12.0) on May 5, 2025.
+each repository since the last release (v5.13.0) on August 23, 2025.
 
 These changes should appear in the next release.  If you need them now,
 see :ref:`developers` for instructions on cloning and installing from the
@@ -31,48 +31,48 @@ Changes to classic
 
 
 See `classic diffs
-<https://github.com/clawpack/classic/compare/v5.12.0...master>`_
+<https://github.com/clawpack/classic/compare/v5.13.0...master>`_
 
 Changes to clawutil
 -------------------
 
 
 See `clawutil diffs
-<https://github.com/clawpack/clawutil/compare/v5.12.0...master>`_
+<https://github.com/clawpack/clawutil/compare/v5.13.0...master>`_
 
 Changes to visclaw
 ------------------
 
 
 See `visclaw diffs
-<https://github.com/clawpack/visclaw/compare/v5.12.0...master>`_
+<https://github.com/clawpack/visclaw/compare/v5.13.0...master>`_
 
 Changes to riemann
 ------------------
 
 
 See `riemann diffs
-<https://github.com/clawpack/riemann/compare/v5.12.0...master>`_
+<https://github.com/clawpack/riemann/compare/v5.13.0...master>`_
 
 Changes to amrclaw
 ------------------
 
 
 See `amrclaw diffs
-<https://github.com/clawpack/amrclaw/compare/v5.12.0...master>`_
+<https://github.com/clawpack/amrclaw/compare/v5.13.0...master>`_
 
 Changes to geoclaw
 ------------------
 
 
-See `geoclaw diffs <https://github.com/clawpack/geoclaw/compare/v5.12.0...master>`_
+See `geoclaw diffs <https://github.com/clawpack/geoclaw/compare/v5.13.0...master>`_
 
 
 Changes to PyClaw
 ------------------
 
 
-See `pyclaw diffs <https://github.com/clawpack/pyclaw/compare/v5.12.0...master>`_
+See `pyclaw diffs <https://github.com/clawpack/pyclaw/compare/v5.13.0...master>`_
 
 ===========================
 Other Clawpack Repositories
@@ -82,10 +82,10 @@ The repositories below are not included in the Clawpack tarfile or pip
 install, but changes to these repositories may also be of interest.
 
 - `apps diffs
-  <https://github.com/clawpack/apps/compare/v5.12.0...master>`_
+  <https://github.com/clawpack/apps/compare/v5.13.0...master>`_
 
 - `doc diffs
-  <https://github.com/clawpack/doc/compare/v5.12.x...dev>`_
+  <https://github.com/clawpack/doc/compare/v5.13.x...dev>`_
 
 - `docker-files diffs
-  <https://github.com/clawpack/docker-files/compare/v5.12.0...master>`_
+  <https://github.com/clawpack/docker-files/compare/v5.13.0...master>`_

_sources/geoclaw.rst.txt

@@ -48,8 +48,10 @@ More will eventually appear in the :ref:`apps`.
    geohints
    topo
    grid_registration
+   topo_order
    topotools
    dtopo
+   kmltools_module
    landslides
    dclaw
    setrun_geoclaw

_sources/installing_fortcodes.rst.txt

@@ -36,9 +36,9 @@ Download a tar file from one of these sources:
 
 After downloading a tar file you can do, e.g. ::
 
-    tar -xzf clawpack-v5.12.0.tar.gz
-    cd clawpack-v5.12.0
-    export CLAW=/full/path/to/clawpack-v5.12.0  # in bash
+    tar -xzf clawpack-v5.13.0.tar.gz
+    cd clawpack-v5.13.0
+    export CLAW=/full/path/to/clawpack-v5.13.0  # in bash
     
 The last command sets an environment variable when using the bash shell.
 The syntax may be different in other shells.  Replace `/full/path/to`
@@ -60,7 +60,7 @@ See :ref:`developers` for more details, but the basic commands are::
 
     git clone https://github.com/clawpack/clawpack.git
     cd clawpack
-    git checkout v5.12.0     # or an older version; `git tag -l` to list options
+    git checkout v5.13.0     # or an older version; `git tag -l` to list options
     git submodule init      # for repositories pyclaw, clawutil, visclaw, etc.
     git submodule update    # clones all the submodule repositories
     export CLAW=/full/path/to/clawpack    # in bash

_sources/installing_pip.rst.txt

@@ -32,7 +32,7 @@ Clawpack is via::
 
 or, more specifically, ::
 
-    pip install --user clawpack==v5.12.0
+    pip install --user clawpack==v5.13.0
 
 or you can choose a previous version from the `PyPi history <https://pypi.org/project/clawpack/#history>`__.
 
@@ -56,7 +56,7 @@ following command
 want to change anything in this command)**::  
 
     pip install --src=$HOME/clawpack_src --user --no-build-isolation -e \
-        git+https://github.com/clawpack/clawpack.git@v5.12.0#egg=clawpack
+        git+https://github.com/clawpack/clawpack.git@v5.13.0#egg=clawpack
 
 
 **Notes:** 
@@ -71,7 +71,7 @@ want to change anything in this command)**::
   :ref:`installing_options` if you want more control.
 
 - This will download Clawpack (via a git clone) into the directory
-  `$HOME/clawpack_src/clawpack-v5.12.0`.  The top 
+  `$HOME/clawpack_src/clawpack-v5.13.0`.  The top 
   installation directory can be changed by modifying the ``--src`` target 
   (or omit this part to put it in your current working directory).
   If you have already downloaded Clawpack via a different mechanism then
@@ -92,11 +92,11 @@ want to change anything in this command)**::
 
 - In order to use the Fortran codes within Clawpack (`classic`,
   `amrclaw`, or `geoclaw`), you should then set the environment
-  variable `CLAW` to point to the `clawpack-v5.12.0` directory within
+  variable `CLAW` to point to the `clawpack-v5.13.0` directory within
   the installation directory `$HOME/clawpack_src`, and `FC` to point
   to the desired Fortran compiler, e.g. in the bash shell::
   
-        export CLAW=$HOME/clawpack_src/clawpack-v5.12.0
+        export CLAW=$HOME/clawpack_src/clawpack-v5.13.0
         export FC=gfortran
 
 

_sources/kmltools_module.rst.txt

@@ -4,7 +4,28 @@
 kmltools module of utility functions 
 ========================================
 
-**This describes new tools added in Clawpack 5.2.1.**
+Use functions in this module to create kml files 
+that can be opened in Google Earth or other GIS tools to display
+lines (e.g. transects),
+polygons of various sorts (e.g. outlines of topofiles, flagregions, fgmax
+regions), or points (indicating gauge locations, for example).
+
+Some functions instead create kmz files that contain png files (showing e.g.
+topography values, maximum inundation depth in an fgmax region, contours of
+the dtopo deformation, etc.) together with a kml wrapper that positions the
+images properly.
+
+If you include the following lines in the `__main__` program of `setrun.py`,
+after `rundata` has been computed by calling `setrun`::
+
+    from clawpack.geoclaw import kmltools
+    kmltools.make_input_data_kmls(rundata)
+
+then `make data`
+will automatically generate a number of useful kml/kmz files from the data
+provided, showing for example the extents of topofiles, dtopofiles,
+flagregions for refinement, gauge locations, etc.
+Clicking on one of these regions pops up additional information.
 
 Documentation auto-generated from the module docstrings
 --------------------------------------------------------