diff --git a/.gitignore b/.gitignore index adb61ce8..a6d169df 100644 --- a/.gitignore +++ b/.gitignore @@ -38,7 +38,6 @@ var/ *.egg-info/ .installed.cfg *.egg -*_version.py # PyInstaller # Usually these files are written by a python script from a template @@ -91,9 +90,6 @@ target/ # OS .DS_Store -# written by setuptools_scm -*/_version.py - # PyBuilder .idea venv/ diff --git a/ngff_spec/CITATION.cff b/ngff_spec/CITATION.cff new file mode 100644 index 00000000..8d8affd6 --- /dev/null +++ b/ngff_spec/CITATION.cff @@ -0,0 +1,88 @@ +cff-version: 1.2.0 +message: Please cite the following works when using this project. +abstract: >- + A growing community is constructing a next-generation file format (NGFF) for + bioimaging to overcome problems of scalability and heterogeneity. Organized by + the Open Microscopy Environment (OME), individuals and institutes across + diverse modalities facing these problems have designed a format specification + process (OME-NGFF) to address these needs. Those community members have built + the format itself – OME-Zarr – along with tools and data resources available + today to increase FAIR access and remove barriers in the scientific process. + The current momentum offers an opportunity to unify a key component of the + bioimaging domain — the file format that underlies so many personal, + institutional, and global data management and analysis tasks. +title: Next-generation file format specification +authors: + - family-names: NGFF-community + given-names: '' +identifiers: + - type: doi + value: 10.1038/s41592-021-01326-w + description: Original Nature Methods article (2021) + - type: doi + value: 10.1101/2023.02.17.528834v2 + description: OME-Zarr preprint (2023) +keywords: + - FAIR + - community + - bioimaging + - data + - cloud + - format +license: CC-BY-4.0 +url: https://ngff.openmicroscopy.org +repository: https://github.com/ome/ngff-spec +preferred-citation: + type: article + doi: 10.1038/s41592-021-01326-w + journal: Nature Methods + month: 11 + start: 1496 + end: 1498 + title: >- + OME-NGFF: a next-generation file format for expanding bioimaging data-access + strategies + issue: 12 + volume: 18 + year: 2021 + authors: + - given-names: Josh + family-names: Moore + orcid: https://orcid.org/0000-0003-4028-811X + - given-names: Chris + family-names: Allan + - given-names: Sébastien + family-names: Besson + orcid: https://orcid.org/0000-0001-8783-1429 + - given-names: Jean-Marie + family-names: Burel + orcid: https://orcid.org/0000-0002-1789-1861 + - given-names: Erin + family-names: Diel + orcid: https://orcid.org/0000-0003-2526-3512 + - given-names: David + family-names: Gault + - given-names: Kevin + family-names: Kozlowski + - given-names: Dominik + family-names: Lindner + orcid: https://orcid.org/0000-0001-8038-1250 + - given-names: Melissa + family-names: Linkert + - given-names: Trevor + family-names: Manz + orcid: https://orcid.org/0000-0001-7694-5164 + - given-names: Will + family-names: Moore + orcid: https://orcid.org/0000-0002-7264-8338 + - given-names: Constantin + family-names: Pape + orcid: https://orcid.org/0000-0001-6562-7187 + - given-names: Christian + family-names: Tischer + orcid: https://orcid.org/0000-0003-4105-1990 + - given-names: Jason R. + family-names: Swedlow + orcid: https://orcid.org/0000-0002-2198-1958 +type: software +repository-code: https://github.com/ome/ngff diff --git a/ngff_spec/_version.py b/ngff_spec/_version.py new file mode 100644 index 00000000..658ac144 --- /dev/null +++ b/ngff_spec/_version.py @@ -0,0 +1 @@ +__version__ = '0.6.dev1' diff --git a/ngff_spec/citing.md b/ngff_spec/citing.md index 6f801dfa..978817fb 100644 --- a/ngff_spec/citing.md +++ b/ngff_spec/citing.md @@ -1,5 +1,7 @@ -Citing -====== +--- +title: Citing +author: "" +--- (citing)= [Next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.](https://ngff.openmicroscopy.org/0.4) diff --git a/ngff_spec/contribute.md b/ngff_spec/contribute.md index 2b802510..ac9b9042 100644 --- a/ngff_spec/contribute.md +++ b/ngff_spec/contribute.md @@ -1,3 +1,6 @@ +--- +author: "" +--- # Contribution guide Contributions to the spec text, examples and schemas are highly welcome @@ -28,6 +31,39 @@ jupyter book build ngff_spec You'll find the built webpages under `_build/html`. +## First contribution + +If you haven't contributed to the spec before, +please add yourself as an author in the `ngff_spec/myst.yml` metadata file. +This should look like this, for example: + +```yaml + - name: John A. Doe + id: jdoe + orcid: xxxx-xxxx-xxxx-xxxx + github: jdoe + affiliations: + - id: key + institution: ICSLDJ University + city: Doeburg + ror: https://ror.org/.... + - name: Jane Doe + affiliations: key +``` + +For more information see [myst documentation on author formatting](https://mystmd.org/guide/frontmatter#frontmatter-authors). + +When you submit your first PR, +make sure to rebuild the `CITATION.cff` file in the root of this repository. +To do so, run the following command: + +```bash +cd ngff_spec/ && jupyter book build --cff +``` + +Copy the generated `CITATION.cff` file from `ngff_spec/CITATION.cff` to the root of this repository +and submit it along with your PR. + ### Text format Contributions should conform to [Semantic Line Breaks (SemBr)](https://sembr.org/), diff --git a/ngff_spec/examples/multiscales_strict/multiscales_example_relative.json b/ngff_spec/examples/multiscales_strict/multiscales_example_relative.json index 8bd828c9..65a6e9d5 100644 --- a/ngff_spec/examples/multiscales_strict/multiscales_example_relative.json +++ b/ngff_spec/examples/multiscales_strict/multiscales_example_relative.json @@ -1,7 +1,7 @@ { "multiscales": [ { - "version": "0.6dev2", + "version": "0.6.dev2", "name": "example", "coordinateSystems" : [ { diff --git a/ngff_spec/examples/multiscales_strict/multiscales_transformations.json b/ngff_spec/examples/multiscales_strict/multiscales_transformations.json index 14304c0a..46e60a4c 100644 --- a/ngff_spec/examples/multiscales_strict/multiscales_transformations.json +++ b/ngff_spec/examples/multiscales_strict/multiscales_transformations.json @@ -3,7 +3,7 @@ "node_type": "group", "attributes": { "ome": { - "version": "0.6dev2", + "version": "0.6.dev2", "multiscales": [ { "coordinateSystems": [ diff --git a/ngff_spec/myst.yml b/ngff_spec/myst.yml index 9f5d92be..46136026 100644 --- a/ngff_spec/myst.yml +++ b/ngff_spec/myst.yml @@ -10,12 +10,96 @@ project: - format: pdf template: plain_latex_book output: exports/book.pdf + - format: cff + type: software + identifiers: + - type: doi + value: 10.1038/s41592-021-01326-w + description: Original Nature Methods article (2021) + - type: doi + value: 10.1101/2023.02.17.528834v2 + description: OME-Zarr preprint (2023) + repository-code: 'https://github.com/ome/ngff' + url: 'https://ngff.openmicroscopy.org' + abstract: >- + A growing community is constructing a next-generation file + format (NGFF) for bioimaging to overcome problems of + scalability and heterogeneity. Organized by the Open + Microscopy Environment (OME), individuals and institutes + across diverse modalities facing these problems have + designed a format specification process (OME-NGFF) to + address these needs. Those community members have built + the format itself – OME-Zarr – along with tools and data + resources available today to increase FAIR access and + remove barriers in the scientific process. The current + momentum offers an opportunity to unify a key component of + the bioimaging domain — the file format that underlies so + many personal, institutional, and global data management + and analysis tasks. + keywords: + - FAIR + - community + - bioimaging + - data + - cloud + - format + license: CC-BY-4.0 + preferred-citation: + type: article + doi: "10.1038/s41592-021-01326-w" + journal: "Nature Methods" + month: 11 + start: 1496 + end: 1498 + title: "OME-NGFF: a next-generation file format for expanding bioimaging data-access strategies" + issue: 12 + volume: 18 + year: 2021 + authors: + - given-names: "Josh" + family-names: "Moore" + orcid: "https://orcid.org/0000-0003-4028-811X" + - given-names: "Chris" + family-names: "Allan" + - given-names: "Sébastien" + family-names: "Besson" + orcid: "https://orcid.org/0000-0001-8783-1429" + - given-names: "Jean-Marie" + family-names: "Burel" + orcid: "https://orcid.org/0000-0002-1789-1861" + - given-names: "Erin" + family-names: "Diel" + orcid: "https://orcid.org/0000-0003-2526-3512" + - given-names: "David" + family-names: "Gault" + - given-names: "Kevin" + family-names: "Kozlowski" + - given-names: "Dominik" + family-names: "Lindner" + orcid: "https://orcid.org/0000-0001-8038-1250" + - given-names: "Melissa" + family-names: "Linkert" + - given-names: "Trevor" + family-names: "Manz" + orcid: "https://orcid.org/0000-0001-7694-5164" + - given-names: "Will" + family-names: "Moore" + orcid: "https://orcid.org/0000-0002-7264-8338" + - given-names: "Constantin" + family-names: "Pape" + orcid: "https://orcid.org/0000-0001-6562-7187" + - given-names: "Christian" + family-names: "Tischer" + orcid: "https://orcid.org/0000-0003-4105-1990" + - given-names: "Jason R." + family-names: "Swedlow" + orcid: "https://orcid.org/0000-0002-2198-1958" toc: - file: specification.md - - file: examples.md + - file: _generated/examples.md children: - pattern: _generated/examples/* - - file: schemas.md + - file: _generated/schemas.md children: - pattern: _generated/schemas/markdown/* - file: contribute.md diff --git a/ngff_spec/pre_build.py b/ngff_spec/pre_build.py index dfa838f2..b1ca8636 100644 --- a/ngff_spec/pre_build.py +++ b/ngff_spec/pre_build.py @@ -23,6 +23,7 @@ def build_json_examples(): index_md = """--- title: NGFF metadata JSON Examples short_title: JSON Examples +author: "" --- This section contains JSON examples for various metadata layouts. @@ -30,12 +31,14 @@ def build_json_examples(): for example in example_types: json_files = glob.glob(os.path.join(input_directory, example, '*.json'), recursive=True) - markdown_file_name = os.path.join(output_directory, f'{example}.md') index_md += f"\n## {example}\n" # add header - markdown_content = f"""# {example}\n\n + markdown_content = f"""--- +title: {example} Examples +author: "" +--- This document contains JSON examples for {example} metadata layouts. @@ -62,10 +65,10 @@ def build_json_examples(): ``` """ # create - with open(markdown_file_name, 'w') as md_file: + with open(os.path.join(output_directory, f'{example}.md'), 'w') as md_file: md_file.write(markdown_content) - with open(os.path.join("examples.md"), 'w') as index_file: + with open(os.path.join("_generated/examples.md"), 'w') as index_file: index_file.write(index_md) def build_json_schemas(): @@ -78,15 +81,12 @@ def build_json_schemas(): os.makedirs(output_directory, exist_ok=True) schema_files = glob.glob(os.path.join(schema_source_dir, '*.schema'), recursive=True) - # Create a resolver mapping for local schemas - schema_mapping = {} - for schema_file in schema_files: - with open(schema_file, 'r') as f: - schema_content = json.load(f) - if '$id' in schema_content: - schema_mapping[schema_content['$id']] = os.path.abspath(schema_file) - index_markdown = """# JSON Schemas + index_markdown = """--- +title: NGFF metadata JSON Schemas +short_title: JSON Schemas +author: "" +--- This section contains JSON schemas for various metadata layouts. Find below links to auto-generated markdown pages or interactive HTML pages for each schema. @@ -110,9 +110,9 @@ def build_json_schemas(): config_md = GenerationConfiguration( template_name='md', with_footer=True, - show_toc=False, - link_to_reused_ref=False, - custom_template_global_vars={'schema_mapping': schema_mapping}) + show_toc=True, + link_to_reused_ref=True, + ) generate_from_filename( os.path.abspath(schema_file), result_file_name=os.path.abspath(output_path_md), @@ -120,15 +120,20 @@ def build_json_schemas(): ) # insert mySt cross-reference at top of markdown files - with open(output_path_md, 'r') as md_file: + with open(output_path_md, 'r', encoding='utf-8') as md_file: md_content = md_file.read() crossref = f"schemas:{Path(schema_file).stem}" - md_content = f"({crossref})=\n\n{md_content}" - with open(output_path_md, 'w') as md_file: + md_content = f"""--- +author: "" +--- +({crossref})=\n\n{md_content} +""" + with open(output_path_md, 'w', encoding='utf-8') as md_file: md_file.write(md_content) link_markdown = f"[{Path(schema_file).stem}](#{crossref})" - except Exception: + except Exception as e: + print(f"Error generating markdown for {schema_file}: {e}") link_markdown = "" try: @@ -136,8 +141,8 @@ def build_json_schemas(): template_name='js', with_footer=True, show_toc=False, - link_to_reused_ref=False, - custom_template_global_vars={'schema_mapping': schema_mapping}) + link_to_reused_ref=True, + ) generate_from_filename( os.path.abspath(schema_file), @@ -146,12 +151,13 @@ def build_json_schemas(): ) link_html = f"[{Path(schema_file).stem}]({output_path_html})" - except Exception: + except Exception as e: + print(f"Error generating HTML for {schema_file}: {e}") link_html = "" index_markdown += f"| {Path(schema_file).stem} | {link_markdown} | {link_html} |\n" - with open(os.path.join("schemas.md"), 'w') as index_file: + with open(os.path.join("_generated/schemas.md"), 'w') as index_file: index_file.write(index_markdown) def build_footer(): @@ -161,8 +167,7 @@ def build_footer(): footer_content = f"""
Copyright © 2020-{year} - OME® - (U. Dundee). + OME®. OME trademark rules apply.
""" diff --git a/ngff_spec/schemas/_version.schema b/ngff_spec/schemas/_version.schema index b20a6702..f1541e9f 100644 --- a/ngff_spec/schemas/_version.schema +++ b/ngff_spec/schemas/_version.schema @@ -1,10 +1,10 @@ { "$schema": "https://json-schema.org/draft/2020-12/schema", - "$id": "https://ngff.openmicroscopy.org/0.6dev2/schemas/_version.schema", + "$id": "https://ngff.openmicroscopy.org/0.6.dev2/schemas/_version.schema", "title": "OME-Zarr Metadata version", "description": "The version of the OME-Zarr Metadata", "type": "string", "enum": [ - "0.6dev2" + "0.6.dev2" ] } diff --git a/ngff_spec/schemas/axes.schema b/ngff_spec/schemas/axes.schema index 3ed096da..1a13045e 100644 --- a/ngff_spec/schemas/axes.schema +++ b/ngff_spec/schemas/axes.schema @@ -1,6 +1,6 @@ { "$schema": "https://json-schema.org/draft/2020-12/schema", - "$id": "https://ngff.openmicroscopy.org/0.6dev2/schemas/axes.schema", + "$id": "https://ngff.openmicroscopy.org/0.6.dev2/schemas/axes.schema", "title": "NGFF Axes", "description": "JSON from OME-NGFF .zattrs", "type": "array", diff --git a/ngff_spec/schemas/bf2raw.schema b/ngff_spec/schemas/bf2raw.schema index edcfaaac..2f92993b 100644 --- a/ngff_spec/schemas/bf2raw.schema +++ b/ngff_spec/schemas/bf2raw.schema @@ -1,6 +1,6 @@ { "$schema": "https://json-schema.org/draft/2020-12/schema", - "$id": "https://ngff.openmicroscopy.org/0.6dev2/schemas/bf2raw.schema", + "$id": "https://ngff.openmicroscopy.org/0.6.dev2/schemas/bf2raw.schema", "title": "OME-Zarr container produced by bioformats2raw", "description": "The zarr.json attributes key", "type": "object", @@ -17,7 +17,7 @@ ] }, "version": { - "$ref": "https://ngff.openmicroscopy.org/0.6dev2/schemas/_version.schema" + "$ref": "https://ngff.openmicroscopy.org/0.6.dev2/schemas/_version.schema" } }, "required": [ diff --git a/ngff_spec/schemas/coordinate_systems.schema b/ngff_spec/schemas/coordinate_systems.schema index f42d5b9a..7ce4460e 100644 --- a/ngff_spec/schemas/coordinate_systems.schema +++ b/ngff_spec/schemas/coordinate_systems.schema @@ -1,6 +1,6 @@ { "$schema": "https://json-schema.org/draft/2020-12/schema", - "$id": "https://ngff.openmicroscopy.org/0.6dev2/schemas/coordinate_systems.schema", + "$id": "https://ngff.openmicroscopy.org/0.6.dev2/schemas/coordinate_systems.schema", "title": "NGFF CoordinateSystem", "description": "JSON from OME-NGFF .zattrs", "type": "array", diff --git a/ngff_spec/schemas/coordinate_systems_and_transforms.schema b/ngff_spec/schemas/coordinate_systems_and_transforms.schema index fd6b4b15..715b6fe9 100644 --- a/ngff_spec/schemas/coordinate_systems_and_transforms.schema +++ b/ngff_spec/schemas/coordinate_systems_and_transforms.schema @@ -1,6 +1,6 @@ { "$schema": "https://json-schema.org/draft/2020-12/schema", - "$id": "https://ngff.openmicroscopy.org/0.6dev2/schemas/coordinate_systems_and_transforms.schema", + "$id": "https://ngff.openmicroscopy.org/0.6.dev2/schemas/coordinate_systems_and_transforms.schema", "title": "NGFF Coordinate Systems and Transforms", "description": "Coordinate Systems and transforms for OME-NGFF", "type": "object", diff --git a/ngff_spec/schemas/coordinate_transformations.schema b/ngff_spec/schemas/coordinate_transformations.schema index 20dce275..3ecbc7f5 100644 --- a/ngff_spec/schemas/coordinate_transformations.schema +++ b/ngff_spec/schemas/coordinate_transformations.schema @@ -1,6 +1,6 @@ { "$schema": "https://json-schema.org/draft/2020-12/schema", - "$id": "https://ngff.openmicroscopy.org/0.6dev2/schemas/coordinate_transformations.schema", + "$id": "https://ngff.openmicroscopy.org/0.6.dev2/schemas/coordinate_transformations.schema", "title": "NGFF Coordinate Systems and Transforms", "description": "Coordinate Systems and transforms for OME-NGFF", "type": "array", diff --git a/ngff_spec/schemas/image.schema b/ngff_spec/schemas/image.schema index d7324d93..ad8729ae 100644 --- a/ngff_spec/schemas/image.schema +++ b/ngff_spec/schemas/image.schema @@ -1,6 +1,6 @@ { "$schema": "https://json-schema.org/draft/2020-12/schema", - "$id": "https://ngff.openmicroscopy.org/0.6dev2/schemas/image.schema", + "$id": "https://ngff.openmicroscopy.org/0.6.dev2/schemas/image.schema", "title": "OME-Zarr Image", "description": "The zarr.json attributes key", "type": "object", @@ -10,13 +10,13 @@ "type": "object", "properties": { "multiscales": { - "$ref": "https://ngff.openmicroscopy.org/0.6dev2/schemas/image.schema#/$defs/multiscales" + "$ref": "https://ngff.openmicroscopy.org/0.6.dev2/schemas/image.schema#/$defs/multiscales" }, "omero": { - "$ref": "https://ngff.openmicroscopy.org/0.6dev2/schemas/image.schema#/$defs/omero" + "$ref": "https://ngff.openmicroscopy.org/0.6.dev2/schemas/image.schema#/$defs/omero" }, "version": { - "$ref": "https://ngff.openmicroscopy.org/0.6dev2/schemas/_version.schema" + "$ref": "https://ngff.openmicroscopy.org/0.6.dev2/schemas/_version.schema" } }, "required": [ @@ -51,7 +51,7 @@ "type": "array", "uniqueItems": true, "items": { - "$ref": "https://ngff.openmicroscopy.org/0.6dev2/schemas/image.schema#/$defs/multiscale_coordinateTransformations" + "$ref": "https://ngff.openmicroscopy.org/0.6.dev2/schemas/image.schema#/$defs/multiscale_coordinateTransformations" }, "minItems": 1, "maxItems": 1 @@ -66,21 +66,21 @@ "version": { "type": "string", "enum": [ - "0.6dev2" + "0.6.dev2" ] }, "coordinateSystems": { "type": "array", "minItems": 1, "items": { - "$ref": "https://ngff.openmicroscopy.org/0.6dev2/schemas/coordinate_systems.schema#/$defs/coordinateSystem" + "$ref": "https://ngff.openmicroscopy.org/0.6.dev2/schemas/coordinate_systems.schema#/$defs/coordinateSystem" } }, "coordinateTransformations": { "type": "array", "minItems": 1, "items": { - "$ref": "https://ngff.openmicroscopy.org/0.6dev2/schemas/coordinate_transformations.schema#/$defs/coordinateTransformation" + "$ref": "https://ngff.openmicroscopy.org/0.6.dev2/schemas/coordinate_transformations.schema#/$defs/coordinateTransformation" } } }, @@ -94,7 +94,7 @@ "multiscale_coordinateTransformations": { "description": "OME-NGFF coordinate transformation for multiscale resolution level datasets (only scale or scale & translate).", "oneOf": [ - {"$ref": "https://ngff.openmicroscopy.org/0.6dev2/schemas/coordinate_transformations.schema#/$defs/scale"}, + {"$ref": "https://ngff.openmicroscopy.org/0.6.dev2/schemas/coordinate_transformations.schema#/$defs/scale"}, { "type": "object", "properties": { @@ -103,8 +103,8 @@ "type": "array", "items": { "oneOf": [ - {"$ref": "https://ngff.openmicroscopy.org/0.6dev2/schemas/coordinate_transformations.schema#/$defs/scale"}, - {"$ref": "https://ngff.openmicroscopy.org/0.6dev2/schemas/coordinate_transformations.schema#/$defs/translation"} + {"$ref": "https://ngff.openmicroscopy.org/0.6.dev2/schemas/coordinate_transformations.schema#/$defs/scale"}, + {"$ref": "https://ngff.openmicroscopy.org/0.6.dev2/schemas/coordinate_transformations.schema#/$defs/translation"} ] }, "minItems": 2, diff --git a/ngff_spec/schemas/label.schema b/ngff_spec/schemas/label.schema index 7f234ed8..4ab19c27 100644 --- a/ngff_spec/schemas/label.schema +++ b/ngff_spec/schemas/label.schema @@ -1,6 +1,6 @@ { "$schema": "https://json-schema.org/draft/2020-12/schema", - "$id": "https://ngff.openmicroscopy.org/0.6dev2/schemas/label.schema", + "$id": "https://ngff.openmicroscopy.org/0.6.dev2/schemas/label.schema", "title": "OME-Zarr labelled image schema", "description": "The zarr.json attributes key", "type": "object", @@ -13,7 +13,7 @@ "$ref": "#/$defs/image-label" }, "version": { - "$ref": "https://ngff.openmicroscopy.org/0.6dev2/schemas/_version.schema" + "$ref": "https://ngff.openmicroscopy.org/0.6.dev2/schemas/_version.schema" } }, "required": [ diff --git a/ngff_spec/schemas/ome.schema b/ngff_spec/schemas/ome.schema index 9a44f6bc..75b92648 100644 --- a/ngff_spec/schemas/ome.schema +++ b/ngff_spec/schemas/ome.schema @@ -1,6 +1,6 @@ { "$schema": "https://json-schema.org/draft/2020-12/schema", - "$id": "https://ngff.openmicroscopy.org/0.6dev2/schemas/ome.schema", + "$id": "https://ngff.openmicroscopy.org/0.6.dev2/schemas/ome.schema", "title": "OME-Zarr group produced by bioformats2raw to contain OME metadata", "description": "The zarr.json attributes key", "type": "object", @@ -18,7 +18,7 @@ "minContains": 1 }, "version": { - "$ref": "https://ngff.openmicroscopy.org/0.6dev2/schemas/_version.schema" + "$ref": "https://ngff.openmicroscopy.org/0.6.dev2/schemas/_version.schema" } }, "required": [ diff --git a/ngff_spec/schemas/ome_zarr.schema b/ngff_spec/schemas/ome_zarr.schema index 2ce06ac6..47c80c0d 100644 --- a/ngff_spec/schemas/ome_zarr.schema +++ b/ngff_spec/schemas/ome_zarr.schema @@ -1,24 +1,24 @@ { "$schema": "https://json-schema.org/draft/2020-12/schema", - "$id": "https://ngff.openmicroscopy.org/0.6dev2/schemas/ome_zarr.schema", + "$id": "https://ngff.openmicroscopy.org/0.6.dev2/schemas/ome_zarr.schema", "anyOf": [ { - "$ref": "https://ngff.openmicroscopy.org/0.6dev2/schemas/bf2raw.schema" + "$ref": "https://ngff.openmicroscopy.org/0.6.dev2/schemas/bf2raw.schema" }, { - "$ref": "https://ngff.openmicroscopy.org/0.6dev2/schemas/image.schema" + "$ref": "https://ngff.openmicroscopy.org/0.6.dev2/schemas/image.schema" }, { - "$ref": "https://ngff.openmicroscopy.org/0.6dev2/schemas/label.schema" + "$ref": "https://ngff.openmicroscopy.org/0.6.dev2/schemas/label.schema" }, { - "$ref": "https://ngff.openmicroscopy.org/0.6dev2/schemas/ome.schema" + "$ref": "https://ngff.openmicroscopy.org/0.6.dev2/schemas/ome.schema" }, { - "$ref": "https://ngff.openmicroscopy.org/0.6dev2/schemas/plate.schema" + "$ref": "https://ngff.openmicroscopy.org/0.6.dev2/schemas/plate.schema" }, { - "$ref": "https://ngff.openmicroscopy.org/0.6dev2/schemas/well.schema" + "$ref": "https://ngff.openmicroscopy.org/0.6.dev2/schemas/well.schema" } ] } diff --git a/ngff_spec/schemas/plate.schema b/ngff_spec/schemas/plate.schema index 06d7edb0..382093f7 100644 --- a/ngff_spec/schemas/plate.schema +++ b/ngff_spec/schemas/plate.schema @@ -1,6 +1,6 @@ { "$schema": "https://json-schema.org/draft/2020-12/schema", - "$id": "https://ngff.openmicroscopy.org/0.6dev2/schemas/plate.schema", + "$id": "https://ngff.openmicroscopy.org/0.6.dev2/schemas/plate.schema", "title": "OME-Zarr plate schema", "description": "The zarr.json attributes key", "type": "object", @@ -138,7 +138,7 @@ ] }, "version": { - "$ref": "https://ngff.openmicroscopy.org/0.6dev2/schemas/_version.schema" + "$ref": "https://ngff.openmicroscopy.org/0.6.dev2/schemas/_version.schema" } }, "required": [ diff --git a/ngff_spec/schemas/strict_axes.schema b/ngff_spec/schemas/strict_axes.schema index f6bab275..7420293d 100644 --- a/ngff_spec/schemas/strict_axes.schema +++ b/ngff_spec/schemas/strict_axes.schema @@ -1,11 +1,11 @@ { "$schema": "https://json-schema.org/draft/2020-12/schema", - "$id": "https://ngff.openmicroscopy.org/0.6dev2/schemas/strict_axes.schema", + "$id": "https://ngff.openmicroscopy.org/0.6.dev2/schemas/strict_axes.schema", "title": "NGFF Strict Axes", "description": "JSON from OME-NGFF .zattrs", "allOf": [ { - "$ref": "https://ngff.openmicroscopy.org/0.6dev2/schemas/axes.schema" + "$ref": "https://ngff.openmicroscopy.org/0.6.dev2/schemas/axes.schema" }, { "items": { diff --git a/ngff_spec/schemas/strict_coordinate_systems.schema b/ngff_spec/schemas/strict_coordinate_systems.schema index e72e5699..7f160fda 100644 --- a/ngff_spec/schemas/strict_coordinate_systems.schema +++ b/ngff_spec/schemas/strict_coordinate_systems.schema @@ -1,6 +1,6 @@ { "$schema": "https://json-schema.org/draft/2020-12/schema", - "$id": "https://ngff.openmicroscopy.org/0.6dev2/schemas/strict_coordinate_systems.schema", + "$id": "https://ngff.openmicroscopy.org/0.6.dev2/schemas/strict_coordinate_systems.schema", "allOf" : [ { "$ref": "coordinate_systems.schema" diff --git a/ngff_spec/schemas/strict_image.schema b/ngff_spec/schemas/strict_image.schema index c60a037a..5207e3bd 100644 --- a/ngff_spec/schemas/strict_image.schema +++ b/ngff_spec/schemas/strict_image.schema @@ -1,9 +1,9 @@ { "$schema": "https://json-schema.org/draft/2020-12/schema", - "$id": "https://ngff.openmicroscopy.org/0.6dev2/schemas/strict_image.schema", + "$id": "https://ngff.openmicroscopy.org/0.6.dev2/schemas/strict_image.schema", "allOf": [ { - "$ref": "https://ngff.openmicroscopy.org/0.6dev2/schemas/image.schema" + "$ref": "https://ngff.openmicroscopy.org/0.6.dev2/schemas/image.schema" }, { "properties": { diff --git a/ngff_spec/schemas/strict_label.schema b/ngff_spec/schemas/strict_label.schema index 32d51275..7557420c 100644 --- a/ngff_spec/schemas/strict_label.schema +++ b/ngff_spec/schemas/strict_label.schema @@ -1,9 +1,9 @@ { "$schema": "https://json-schema.org/draft/2020-12/schema", - "$id": "https://ngff.openmicroscopy.org/0.6dev2/schemas/strict_label.schema", + "$id": "https://ngff.openmicroscopy.org/0.6.dev2/schemas/strict_label.schema", "allOf": [ { - "$ref": "https://ngff.openmicroscopy.org/0.6dev2/schemas/label.schema" + "$ref": "https://ngff.openmicroscopy.org/0.6.dev2/schemas/label.schema" }, { "properties": { diff --git a/ngff_spec/schemas/strict_ome_zarr.schema b/ngff_spec/schemas/strict_ome_zarr.schema index 67969ab5..187a962f 100644 --- a/ngff_spec/schemas/strict_ome_zarr.schema +++ b/ngff_spec/schemas/strict_ome_zarr.schema @@ -1,24 +1,24 @@ { "$schema": "https://json-schema.org/draft/2020-12/schema", - "$id": "https://ngff.openmicroscopy.org/0.6dev2/schemas/strict_ome_zarr.schema", + "$id": "https://ngff.openmicroscopy.org/0.6.dev2/schemas/strict_ome_zarr.schema", "anyOf": [ { - "$ref": "https://ngff.openmicroscopy.org/0.6dev2/schemas/bf2raw.schema" + "$ref": "https://ngff.openmicroscopy.org/0.6.dev2/schemas/bf2raw.schema" }, { - "$ref": "https://ngff.openmicroscopy.org/0.6dev2/schemas/strict_image.schema" + "$ref": "https://ngff.openmicroscopy.org/0.6.dev2/schemas/strict_image.schema" }, { - "$ref": "https://ngff.openmicroscopy.org/0.6dev2/schemas/strict_label.schema" + "$ref": "https://ngff.openmicroscopy.org/0.6.dev2/schemas/strict_label.schema" }, { - "$ref": "https://ngff.openmicroscopy.org/0.6dev2/schemas/ome.schema" + "$ref": "https://ngff.openmicroscopy.org/0.6.dev2/schemas/ome.schema" }, { - "$ref": "https://ngff.openmicroscopy.org/0.6dev2/schemas/strict_plate.schema" + "$ref": "https://ngff.openmicroscopy.org/0.6.dev2/schemas/strict_plate.schema" }, { - "$ref": "https://ngff.openmicroscopy.org/0.6dev2/schemas/strict_well.schema" + "$ref": "https://ngff.openmicroscopy.org/0.6.dev2/schemas/strict_well.schema" } ] } diff --git a/ngff_spec/schemas/strict_plate.schema b/ngff_spec/schemas/strict_plate.schema index a8691748..666dd65b 100644 --- a/ngff_spec/schemas/strict_plate.schema +++ b/ngff_spec/schemas/strict_plate.schema @@ -1,9 +1,9 @@ { "$schema": "https://json-schema.org/draft/2020-12/schema", - "$id": "https://ngff.openmicroscopy.org/0.6dev2/schemas/strict_plate.schema", + "$id": "https://ngff.openmicroscopy.org/0.6.dev2/schemas/strict_plate.schema", "allOf": [ { - "$ref": "https://ngff.openmicroscopy.org/0.6dev2/schemas/plate.schema" + "$ref": "https://ngff.openmicroscopy.org/0.6.dev2/schemas/plate.schema" }, { "properties": { diff --git a/ngff_spec/schemas/strict_well.schema b/ngff_spec/schemas/strict_well.schema index 8e21ae5f..3ed4a084 100644 --- a/ngff_spec/schemas/strict_well.schema +++ b/ngff_spec/schemas/strict_well.schema @@ -1,9 +1,9 @@ { "$schema": "https://json-schema.org/draft/2020-12/schema", - "$id": "https://ngff.openmicroscopy.org/0.6dev2/schemas/strict_well.schema", + "$id": "https://ngff.openmicroscopy.org/0.6.dev2/schemas/strict_well.schema", "allOf": [ { - "$ref": "https://ngff.openmicroscopy.org/0.6dev2/schemas/well.schema" + "$ref": "https://ngff.openmicroscopy.org/0.6.dev2/schemas/well.schema" } ] } diff --git a/ngff_spec/schemas/well.schema b/ngff_spec/schemas/well.schema index f81fafa9..9985430f 100644 --- a/ngff_spec/schemas/well.schema +++ b/ngff_spec/schemas/well.schema @@ -1,6 +1,6 @@ { "$schema": "https://json-schema.org/draft/2020-12/schema", - "$id": "https://ngff.openmicroscopy.org/0.6dev2/schemas/well.schema", + "$id": "https://ngff.openmicroscopy.org/0.6.dev2/schemas/well.schema", "title": "OME-Zarr well schema", "description": "JSON from OME-Zarr zarr.json", "type": "object", @@ -41,7 +41,7 @@ ] }, "version": { - "$ref": "https://ngff.openmicroscopy.org/0.6dev2/schemas/_version.schema" + "$ref": "https://ngff.openmicroscopy.org/0.6.dev2/schemas/_version.schema" } }, "required": [ diff --git a/ngff_spec/version_history.md b/ngff_spec/version_history.md index 62de9369..185810a0 100644 --- a/ngff_spec/version_history.md +++ b/ngff_spec/version_history.md @@ -1,11 +1,25 @@ +--- +author: "" +--- # Version History - (history)= All notable changes to this project will be documented in this file. The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/). +## [0.6.dev2] - 2025-12-02 + +### Changed + +Implemented feedback from [RFC-5 review 1 and 2](https://ngff.openmicroscopy.org/rfc/5/reviews/index.html) + +## [0.6dev1] - 2025-11-18 + +### Added + +Initial proposal for RFC-5: Transforms. [See proposal text](https://ngff.openmicroscopy.org/rfc/5/versions/1/index.html). + ## [0.5.2] - 2025-01-10 ### Changed diff --git a/pyproject.toml b/pyproject.toml index f9e7d114..b0003918 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -2,7 +2,6 @@ name = "ngff-spec" dynamic = ["version"] description = "Next-generation file format specification" -license = {file = "LICENSE"} requires-python = ">=3.10" dependencies = [ @@ -19,10 +18,12 @@ testing = [ "pytest", # https://docs.pytest.org/en/latest/contents.html ] -[tool.setuptools_scm] -write_to = "ngff_spec/_version.py" -fallback_version = "0.0.1+nogit" +[tool.hatch.version] +path = "ngff_spec/_version.py" + +[tool.hatch.build.targets.wheel] +packages = ["ngff_spec"] [build-system] -requires = ["setuptools >= 77.0.3", "setuptools-scm"] -build-backend = "setuptools.build_meta" \ No newline at end of file +requires = ["hatchling>=1.8.0,<1.21.1"] +build-backend = "hatchling.build" \ No newline at end of file diff --git a/tests/attributes/spec/invalid/image/duplicate_axes.json b/tests/attributes/spec/invalid/image/duplicate_axes.json index b8912d7b..731a13ad 100644 --- a/tests/attributes/spec/invalid/image/duplicate_axes.json +++ b/tests/attributes/spec/invalid/image/duplicate_axes.json @@ -1,6 +1,6 @@ { "ome": { - "version": "0.6dev2", + "version": "0.6.dev2", "multiscales": [ { "coordinateSystems": [ diff --git a/tests/attributes/spec/invalid/image/duplicate_scale.json b/tests/attributes/spec/invalid/image/duplicate_scale.json index c9dfd769..fec599b3 100644 --- a/tests/attributes/spec/invalid/image/duplicate_scale.json +++ b/tests/attributes/spec/invalid/image/duplicate_scale.json @@ -1,6 +1,6 @@ { "ome": { - "version": "0.6dev2", + "version": "0.6.dev2", "multiscales": [ { "coordinateSystems": [ diff --git a/tests/attributes/spec/invalid/image/empty_transformations.json b/tests/attributes/spec/invalid/image/empty_transformations.json index d1dd5116..f4ffaf65 100644 --- a/tests/attributes/spec/invalid/image/empty_transformations.json +++ b/tests/attributes/spec/invalid/image/empty_transformations.json @@ -1,6 +1,6 @@ { "ome": { - "version": "0.6dev2", + "version": "0.6.dev2", "multiscales": [ { "coordinateSystems": [ diff --git a/tests/attributes/spec/invalid/image/invalid_axes_count.json b/tests/attributes/spec/invalid/image/invalid_axes_count.json index 8753a068..a9a45e85 100644 --- a/tests/attributes/spec/invalid/image/invalid_axes_count.json +++ b/tests/attributes/spec/invalid/image/invalid_axes_count.json @@ -1,6 +1,6 @@ { "ome": { - "version": "0.6dev2", + "version": "0.6.dev2", "multiscales": [ { "coordinateSystems": [ diff --git a/tests/attributes/spec/invalid/image/invalid_axis_type.json b/tests/attributes/spec/invalid/image/invalid_axis_type.json index 999cc0de..4775395d 100644 --- a/tests/attributes/spec/invalid/image/invalid_axis_type.json +++ b/tests/attributes/spec/invalid/image/invalid_axis_type.json @@ -1,6 +1,6 @@ { "ome": { - "version": "0.6dev2", + "version": "0.6.dev2", "multiscales": [ { "coordinateSystems": [ diff --git a/tests/attributes/spec/invalid/image/invalid_channels_color.json b/tests/attributes/spec/invalid/image/invalid_channels_color.json index a5915e9b..a5717520 100644 --- a/tests/attributes/spec/invalid/image/invalid_channels_color.json +++ b/tests/attributes/spec/invalid/image/invalid_channels_color.json @@ -1,6 +1,6 @@ { "ome": { - "version": "0.6dev2", + "version": "0.6.dev2", "multiscales": [ { "coordinateSystems": [ diff --git a/tests/attributes/spec/invalid/image/invalid_channels_window.json b/tests/attributes/spec/invalid/image/invalid_channels_window.json index f3946490..481d0b9b 100644 --- a/tests/attributes/spec/invalid/image/invalid_channels_window.json +++ b/tests/attributes/spec/invalid/image/invalid_channels_window.json @@ -1,6 +1,6 @@ { "ome": { - "version": "0.6dev2", + "version": "0.6.dev2", "multiscales": [ { "coordinateSystems": [ diff --git a/tests/attributes/spec/invalid/image/invalid_multiscales_transformations.json b/tests/attributes/spec/invalid/image/invalid_multiscales_transformations.json index 7c9db104..7362299b 100644 --- a/tests/attributes/spec/invalid/image/invalid_multiscales_transformations.json +++ b/tests/attributes/spec/invalid/image/invalid_multiscales_transformations.json @@ -1,6 +1,6 @@ { "ome": { - "version": "0.6dev2", + "version": "0.6.dev2", "multiscales": [ { "coordinateSystems": [ diff --git a/tests/attributes/spec/invalid/image/invalid_path.json b/tests/attributes/spec/invalid/image/invalid_path.json index 6b793b0a..26585f0f 100644 --- a/tests/attributes/spec/invalid/image/invalid_path.json +++ b/tests/attributes/spec/invalid/image/invalid_path.json @@ -1,6 +1,6 @@ { "ome": { - "version": "0.6dev2", + "version": "0.6.dev2", "multiscales": [ { "coordinateSystems": [ diff --git a/tests/attributes/spec/invalid/image/invalid_transformation_type.json b/tests/attributes/spec/invalid/image/invalid_transformation_type.json index e124734f..df8a4981 100644 --- a/tests/attributes/spec/invalid/image/invalid_transformation_type.json +++ b/tests/attributes/spec/invalid/image/invalid_transformation_type.json @@ -1,6 +1,6 @@ { "ome": { - "version": "0.6dev2", + "version": "0.6.dev2", "multiscales": [ { "coordinateSystems": [ diff --git a/tests/attributes/spec/invalid/image/missing_axes.json b/tests/attributes/spec/invalid/image/missing_axes.json index f8c4ff35..434fa0e7 100644 --- a/tests/attributes/spec/invalid/image/missing_axes.json +++ b/tests/attributes/spec/invalid/image/missing_axes.json @@ -1,6 +1,6 @@ { "ome": { - "version": "0.6dev2", + "version": "0.6.dev2", "multiscales": [ { "datasets": [ diff --git a/tests/attributes/spec/invalid/image/missing_axes_name.json b/tests/attributes/spec/invalid/image/missing_axes_name.json index edac6ead..6acf6a0c 100644 --- a/tests/attributes/spec/invalid/image/missing_axes_name.json +++ b/tests/attributes/spec/invalid/image/missing_axes_name.json @@ -1,6 +1,6 @@ { "ome": { - "version": "0.6dev2", + "version": "0.6.dev2", "multiscales": [ { "coordinateSystems": [ diff --git a/tests/attributes/spec/invalid/image/missing_datasets.json b/tests/attributes/spec/invalid/image/missing_datasets.json index 063adf00..13a7ef4d 100644 --- a/tests/attributes/spec/invalid/image/missing_datasets.json +++ b/tests/attributes/spec/invalid/image/missing_datasets.json @@ -1,6 +1,6 @@ { "ome": { - "version": "0.6dev2", + "version": "0.6.dev2", "multiscales": [ { "coordinateSystems": [ diff --git a/tests/attributes/spec/invalid/image/missing_path.json b/tests/attributes/spec/invalid/image/missing_path.json index f8bf213d..422037b8 100644 --- a/tests/attributes/spec/invalid/image/missing_path.json +++ b/tests/attributes/spec/invalid/image/missing_path.json @@ -1,6 +1,6 @@ { "ome": { - "version": "0.6dev2", + "version": "0.6.dev2", "multiscales": [ { "coordinateSystems": [ diff --git a/tests/attributes/spec/invalid/image/missing_scale.json b/tests/attributes/spec/invalid/image/missing_scale.json index a5ba7b05..cd9af492 100644 --- a/tests/attributes/spec/invalid/image/missing_scale.json +++ b/tests/attributes/spec/invalid/image/missing_scale.json @@ -1,6 +1,6 @@ { "ome": { - "version": "0.6dev2", + "version": "0.6.dev2", "multiscales": [ { "coordinateSystems": [ diff --git a/tests/attributes/spec/invalid/image/missing_space_axes.json b/tests/attributes/spec/invalid/image/missing_space_axes.json index 44837306..7bdaf11f 100644 --- a/tests/attributes/spec/invalid/image/missing_space_axes.json +++ b/tests/attributes/spec/invalid/image/missing_space_axes.json @@ -1,6 +1,6 @@ { "ome": { - "version": "0.6dev2", + "version": "0.6.dev2", "multiscales": [ { "coordinateSystems": [ diff --git a/tests/attributes/spec/invalid/image/missing_transformations.json b/tests/attributes/spec/invalid/image/missing_transformations.json index eec3715f..847d330e 100644 --- a/tests/attributes/spec/invalid/image/missing_transformations.json +++ b/tests/attributes/spec/invalid/image/missing_transformations.json @@ -1,6 +1,6 @@ { "ome": { - "version": "0.6dev2", + "version": "0.6.dev2", "multiscales": [ { "coordinateSystems": [ diff --git a/tests/attributes/spec/invalid/image/no_axes.json b/tests/attributes/spec/invalid/image/no_axes.json index bede613d..6dc2b35e 100644 --- a/tests/attributes/spec/invalid/image/no_axes.json +++ b/tests/attributes/spec/invalid/image/no_axes.json @@ -1,6 +1,6 @@ { "ome": { - "version": "0.6dev2", + "version": "0.6.dev2", "multiscales": [ { "axes": [], diff --git a/tests/attributes/spec/invalid/image/no_datasets.json b/tests/attributes/spec/invalid/image/no_datasets.json index 42c2660d..42579cf8 100644 --- a/tests/attributes/spec/invalid/image/no_datasets.json +++ b/tests/attributes/spec/invalid/image/no_datasets.json @@ -1,6 +1,6 @@ { "ome": { - "version": "0.6dev2", + "version": "0.6.dev2", "multiscales": [ { "coordinateSystems": [ diff --git a/tests/attributes/spec/invalid/image/no_multiscales.json b/tests/attributes/spec/invalid/image/no_multiscales.json index 66d581b0..8e3a3aba 100644 --- a/tests/attributes/spec/invalid/image/no_multiscales.json +++ b/tests/attributes/spec/invalid/image/no_multiscales.json @@ -1,6 +1,6 @@ { "ome": { - "version": "0.6dev2", + "version": "0.6.dev2", "multiscales": [] }, "_conformance": { diff --git a/tests/attributes/spec/invalid/image/one_space_axes.json b/tests/attributes/spec/invalid/image/one_space_axes.json index 25bda814..6c5affe7 100644 --- a/tests/attributes/spec/invalid/image/one_space_axes.json +++ b/tests/attributes/spec/invalid/image/one_space_axes.json @@ -1,6 +1,6 @@ { "ome": { - "version": "0.6dev2", + "version": "0.6.dev2", "multiscales": [ { "coordinateSystems": [ diff --git a/tests/attributes/spec/invalid/image/too_many_axes.json b/tests/attributes/spec/invalid/image/too_many_axes.json index ab241608..bf02199b 100644 --- a/tests/attributes/spec/invalid/image/too_many_axes.json +++ b/tests/attributes/spec/invalid/image/too_many_axes.json @@ -1,6 +1,6 @@ { "ome": { - "version": "0.6dev2", + "version": "0.6.dev2", "multiscales": [ { "coordinateSystems": [ diff --git a/tests/attributes/spec/invalid/image/too_many_space_axes.json b/tests/attributes/spec/invalid/image/too_many_space_axes.json index 29054060..16e9af7d 100644 --- a/tests/attributes/spec/invalid/image/too_many_space_axes.json +++ b/tests/attributes/spec/invalid/image/too_many_space_axes.json @@ -1,6 +1,6 @@ { "ome": { - "version": "0.6dev2", + "version": "0.6.dev22", "multiscales": [ { "coordinateSystems": [ diff --git a/tests/attributes/spec/invalid/label/colors_duplicate.json b/tests/attributes/spec/invalid/label/colors_duplicate.json index 0ae3bd28..e104c02d 100644 --- a/tests/attributes/spec/invalid/label/colors_duplicate.json +++ b/tests/attributes/spec/invalid/label/colors_duplicate.json @@ -1,6 +1,6 @@ { "ome": { - "version": "0.6dev2", + "version": "0.6.dev2", "image-label": { "colors": [ { diff --git a/tests/attributes/spec/invalid/label/colors_no_label_value.json b/tests/attributes/spec/invalid/label/colors_no_label_value.json index 17008f97..946c3402 100644 --- a/tests/attributes/spec/invalid/label/colors_no_label_value.json +++ b/tests/attributes/spec/invalid/label/colors_no_label_value.json @@ -1,6 +1,6 @@ { "ome": { - "version": "0.6dev2", + "version": "0.6.dev2", "image-label": { "colors": [ { diff --git a/tests/attributes/spec/invalid/label/colors_rgba_length.json b/tests/attributes/spec/invalid/label/colors_rgba_length.json index 990ebd3c..789bdd5e 100644 --- a/tests/attributes/spec/invalid/label/colors_rgba_length.json +++ b/tests/attributes/spec/invalid/label/colors_rgba_length.json @@ -1,6 +1,6 @@ { "ome": { - "version": "0.6dev2", + "version": "0.6.dev2", "image-label": { "colors": [ { diff --git a/tests/attributes/spec/invalid/label/colors_rgba_type.json b/tests/attributes/spec/invalid/label/colors_rgba_type.json index 071055fc..5bc618e0 100644 --- a/tests/attributes/spec/invalid/label/colors_rgba_type.json +++ b/tests/attributes/spec/invalid/label/colors_rgba_type.json @@ -1,6 +1,6 @@ { "ome": { - "version": "0.6dev2", + "version": "0.6.dev2", "image-label": { "colors": [ { diff --git a/tests/attributes/spec/invalid/label/empty_colors.json b/tests/attributes/spec/invalid/label/empty_colors.json index 237ac8b8..1711513d 100644 --- a/tests/attributes/spec/invalid/label/empty_colors.json +++ b/tests/attributes/spec/invalid/label/empty_colors.json @@ -1,6 +1,6 @@ { "ome": { - "version": "0.6dev2", + "version": "0.6.dev2", "image-label": { "colors": [] } diff --git a/tests/attributes/spec/invalid/label/empty_properties.json b/tests/attributes/spec/invalid/label/empty_properties.json index 9d78a454..02392887 100644 --- a/tests/attributes/spec/invalid/label/empty_properties.json +++ b/tests/attributes/spec/invalid/label/empty_properties.json @@ -1,6 +1,6 @@ { "ome": { - "version": "0.6dev2", + "version": "0.6.dev2", "image-label": { "properties": [] } diff --git a/tests/attributes/spec/invalid/label/properties_no_label_value.json b/tests/attributes/spec/invalid/label/properties_no_label_value.json index da688bb7..5c5fce16 100644 --- a/tests/attributes/spec/invalid/label/properties_no_label_value.json +++ b/tests/attributes/spec/invalid/label/properties_no_label_value.json @@ -1,6 +1,6 @@ { "ome": { - "version": "0.6dev2", + "version": "0.6.dev2", "image-label": { "properties": [ { diff --git a/tests/attributes/spec/invalid/plate/acquisition_negative_starttime.json b/tests/attributes/spec/invalid/plate/acquisition_negative_starttime.json index 430c6f6b..11498993 100644 --- a/tests/attributes/spec/invalid/plate/acquisition_negative_starttime.json +++ b/tests/attributes/spec/invalid/plate/acquisition_negative_starttime.json @@ -1,6 +1,6 @@ { "ome": { - "version": "0.6dev2", + "version": "0.6.dev2", "plate": { "acquisitions": [ { diff --git a/tests/attributes/spec/invalid/plate/acquisition_noninteger_endtime.json b/tests/attributes/spec/invalid/plate/acquisition_noninteger_endtime.json index b9e7fccd..f1cace8a 100644 --- a/tests/attributes/spec/invalid/plate/acquisition_noninteger_endtime.json +++ b/tests/attributes/spec/invalid/plate/acquisition_noninteger_endtime.json @@ -1,6 +1,6 @@ { "ome": { - "version": "0.6dev2", + "version": "0.6.dev2", "plate": { "acquisitions": [ { diff --git a/tests/attributes/spec/invalid/plate/acquisition_noninteger_starttime.json b/tests/attributes/spec/invalid/plate/acquisition_noninteger_starttime.json index bcef6cce..82c5014b 100644 --- a/tests/attributes/spec/invalid/plate/acquisition_noninteger_starttime.json +++ b/tests/attributes/spec/invalid/plate/acquisition_noninteger_starttime.json @@ -1,6 +1,6 @@ { "ome": { - "version": "0.6dev2", + "version": "0.6.dev2", "plate": { "acquisitions": [ { diff --git a/tests/attributes/spec/invalid/plate/acquisition_zero_maximumfieldcount.json b/tests/attributes/spec/invalid/plate/acquisition_zero_maximumfieldcount.json index bd1303d6..56225f52 100644 --- a/tests/attributes/spec/invalid/plate/acquisition_zero_maximumfieldcount.json +++ b/tests/attributes/spec/invalid/plate/acquisition_zero_maximumfieldcount.json @@ -1,6 +1,6 @@ { "ome": { - "version": "0.6dev2", + "version": "0.6.dev2", "plate": { "acquisitions": [ { diff --git a/tests/attributes/spec/invalid/plate/duplicate_columns.json b/tests/attributes/spec/invalid/plate/duplicate_columns.json index 761df261..3c39f156 100644 --- a/tests/attributes/spec/invalid/plate/duplicate_columns.json +++ b/tests/attributes/spec/invalid/plate/duplicate_columns.json @@ -1,6 +1,6 @@ { "ome": { - "version": "0.6dev2", + "version": "0.6.dev2", "plate": { "columns": [ { diff --git a/tests/attributes/spec/invalid/plate/duplicate_rows-2.json b/tests/attributes/spec/invalid/plate/duplicate_rows-2.json index af4986e0..4f9eb402 100644 --- a/tests/attributes/spec/invalid/plate/duplicate_rows-2.json +++ b/tests/attributes/spec/invalid/plate/duplicate_rows-2.json @@ -1,6 +1,6 @@ { "ome": { - "version": "0.6dev2", + "version": "0.6.dev2", "plate": { "columns": [ { diff --git a/tests/attributes/spec/invalid/plate/duplicate_rows.json b/tests/attributes/spec/invalid/plate/duplicate_rows.json index 7d8bcd36..9ddcfbc8 100644 --- a/tests/attributes/spec/invalid/plate/duplicate_rows.json +++ b/tests/attributes/spec/invalid/plate/duplicate_rows.json @@ -1,6 +1,6 @@ { "ome": { - "version": "0.6dev2", + "version": "0.6.dev2", "plate": { "columns": [ { diff --git a/tests/attributes/spec/invalid/plate/empty_columns.json b/tests/attributes/spec/invalid/plate/empty_columns.json index 7d9b8e62..2b72fd3d 100644 --- a/tests/attributes/spec/invalid/plate/empty_columns.json +++ b/tests/attributes/spec/invalid/plate/empty_columns.json @@ -1,6 +1,6 @@ { "ome": { - "version": "0.6dev2", + "version": "0.6.dev2", "plate": { "columns": [], "rows": [ diff --git a/tests/attributes/spec/invalid/plate/empty_rows.json b/tests/attributes/spec/invalid/plate/empty_rows.json index 0cd3cd9a..5c03ac91 100644 --- a/tests/attributes/spec/invalid/plate/empty_rows.json +++ b/tests/attributes/spec/invalid/plate/empty_rows.json @@ -1,6 +1,6 @@ { "ome": { - "version": "0.6dev2", + "version": "0.6.dev2", "plate": { "columns": [ { diff --git a/tests/attributes/spec/invalid/plate/empty_wells.json b/tests/attributes/spec/invalid/plate/empty_wells.json index 1f8ce87a..9b099a89 100644 --- a/tests/attributes/spec/invalid/plate/empty_wells.json +++ b/tests/attributes/spec/invalid/plate/empty_wells.json @@ -1,6 +1,6 @@ { "ome": { - "version": "0.6dev2", + "version": "0.6.dev2", "plate": { "columns": [ { diff --git a/tests/attributes/spec/invalid/plate/missing_acquisition_id.json b/tests/attributes/spec/invalid/plate/missing_acquisition_id.json index cc4b2737..f3370e3b 100644 --- a/tests/attributes/spec/invalid/plate/missing_acquisition_id.json +++ b/tests/attributes/spec/invalid/plate/missing_acquisition_id.json @@ -1,6 +1,6 @@ { "ome": { - "version": "0.6dev2", + "version": "0.6.dev2", "plate": { "acquisitions": [ { diff --git a/tests/attributes/spec/invalid/plate/missing_column_name.json b/tests/attributes/spec/invalid/plate/missing_column_name.json index 8185aa37..f866f544 100644 --- a/tests/attributes/spec/invalid/plate/missing_column_name.json +++ b/tests/attributes/spec/invalid/plate/missing_column_name.json @@ -1,6 +1,6 @@ { "ome": { - "version": "0.6dev2", + "version": "0.6.dev2", "plate": { "columns": [ { diff --git a/tests/attributes/spec/invalid/plate/missing_columns.json b/tests/attributes/spec/invalid/plate/missing_columns.json index 9b3a51f1..380d7fff 100644 --- a/tests/attributes/spec/invalid/plate/missing_columns.json +++ b/tests/attributes/spec/invalid/plate/missing_columns.json @@ -1,6 +1,6 @@ { "ome": { - "version": "0.6dev2", + "version": "0.6.dev2", "plate": { "rows": [ { diff --git a/tests/attributes/spec/invalid/plate/missing_row_name.json b/tests/attributes/spec/invalid/plate/missing_row_name.json index adf1daf2..6d0d3bf4 100644 --- a/tests/attributes/spec/invalid/plate/missing_row_name.json +++ b/tests/attributes/spec/invalid/plate/missing_row_name.json @@ -1,6 +1,6 @@ { "ome": { - "version": "0.6dev2", + "version": "0.6.dev2", "plate": { "columns": [ { diff --git a/tests/attributes/spec/invalid/plate/missing_rows.json b/tests/attributes/spec/invalid/plate/missing_rows.json index 6ba863cf..39dc2e3d 100644 --- a/tests/attributes/spec/invalid/plate/missing_rows.json +++ b/tests/attributes/spec/invalid/plate/missing_rows.json @@ -1,6 +1,6 @@ { "ome": { - "version": "0.6dev2", + "version": "0.6.dev2", "plate": { "columns": [ { diff --git a/tests/attributes/spec/invalid/plate/missing_well_columnIndex.json b/tests/attributes/spec/invalid/plate/missing_well_columnIndex.json index 60356f24..3a2c408a 100644 --- a/tests/attributes/spec/invalid/plate/missing_well_columnIndex.json +++ b/tests/attributes/spec/invalid/plate/missing_well_columnIndex.json @@ -1,6 +1,6 @@ { "ome": { - "version": "0.6dev2", + "version": "0.6.dev2", "plate": { "columns": [ { diff --git a/tests/attributes/spec/invalid/plate/missing_well_path.json b/tests/attributes/spec/invalid/plate/missing_well_path.json index dcca5f5e..473617ad 100644 --- a/tests/attributes/spec/invalid/plate/missing_well_path.json +++ b/tests/attributes/spec/invalid/plate/missing_well_path.json @@ -1,6 +1,6 @@ { "ome": { - "version": "0.6dev2", + "version": "0.6.dev2", "plate": { "columns": [ { diff --git a/tests/attributes/spec/invalid/plate/missing_well_rowIndex.json b/tests/attributes/spec/invalid/plate/missing_well_rowIndex.json index 670b95bb..fca57a20 100644 --- a/tests/attributes/spec/invalid/plate/missing_well_rowIndex.json +++ b/tests/attributes/spec/invalid/plate/missing_well_rowIndex.json @@ -1,6 +1,6 @@ { "ome": { - "version": "0.6dev2", + "version": "0.6.dev2", "plate": { "columns": [ { diff --git a/tests/attributes/spec/invalid/plate/missing_wells.json b/tests/attributes/spec/invalid/plate/missing_wells.json index cf16b0e7..63c56075 100644 --- a/tests/attributes/spec/invalid/plate/missing_wells.json +++ b/tests/attributes/spec/invalid/plate/missing_wells.json @@ -1,6 +1,6 @@ { "ome": { - "version": "0.6dev2", + "version": "0.6.dev2", "plate": { "columns": [ { diff --git a/tests/attributes/spec/invalid/plate/negative_acquisition_id.json b/tests/attributes/spec/invalid/plate/negative_acquisition_id.json index a364d501..fbf60ca6 100644 --- a/tests/attributes/spec/invalid/plate/negative_acquisition_id.json +++ b/tests/attributes/spec/invalid/plate/negative_acquisition_id.json @@ -1,6 +1,6 @@ { "ome": { - "version": "0.6dev2", + "version": "0.6.dev2", "plate": { "acquisitions": [ { diff --git a/tests/attributes/spec/invalid/plate/negative_endtime.json b/tests/attributes/spec/invalid/plate/negative_endtime.json index f4210a8b..7a765990 100644 --- a/tests/attributes/spec/invalid/plate/negative_endtime.json +++ b/tests/attributes/spec/invalid/plate/negative_endtime.json @@ -1,6 +1,6 @@ { "ome": { - "version": "0.6dev2", + "version": "0.6.dev2", "plate": { "acquisitions": [ { diff --git a/tests/attributes/spec/invalid/plate/non_alphanumeric_column.json b/tests/attributes/spec/invalid/plate/non_alphanumeric_column.json index 02b99026..343de6c9 100644 --- a/tests/attributes/spec/invalid/plate/non_alphanumeric_column.json +++ b/tests/attributes/spec/invalid/plate/non_alphanumeric_column.json @@ -1,6 +1,6 @@ { "ome": { - "version": "0.6dev2", + "version": "0.6.dev2", "plate": { "columns": [ { diff --git a/tests/attributes/spec/invalid/plate/non_integer_acquisition_id.json b/tests/attributes/spec/invalid/plate/non_integer_acquisition_id.json index 3503d856..c4e37b6d 100644 --- a/tests/attributes/spec/invalid/plate/non_integer_acquisition_id.json +++ b/tests/attributes/spec/invalid/plate/non_integer_acquisition_id.json @@ -1,6 +1,6 @@ { "ome": { - "version": "0.6dev2", + "version": "0.6.dev2", "plate": { "acquisitions": [ { diff --git a/tests/attributes/spec/invalid/plate/non_integer_acquisition_maximumfieldcount.json b/tests/attributes/spec/invalid/plate/non_integer_acquisition_maximumfieldcount.json index 8e84cdbd..85568666 100644 --- a/tests/attributes/spec/invalid/plate/non_integer_acquisition_maximumfieldcount.json +++ b/tests/attributes/spec/invalid/plate/non_integer_acquisition_maximumfieldcount.json @@ -1,6 +1,6 @@ { "ome": { - "version": "0.6dev2", + "version": "0.6.dev2", "plate": { "acquisitions": [ { diff --git a/tests/attributes/spec/invalid/plate/well_1group.json b/tests/attributes/spec/invalid/plate/well_1group.json index 3c85a252..df2363cc 100644 --- a/tests/attributes/spec/invalid/plate/well_1group.json +++ b/tests/attributes/spec/invalid/plate/well_1group.json @@ -1,6 +1,6 @@ { "ome": { - "version": "0.6dev2", + "version": "0.6.dev2", "plate": { "columns": [ { diff --git a/tests/attributes/spec/invalid/plate/well_3groups.json b/tests/attributes/spec/invalid/plate/well_3groups.json index c3b4545b..6cd37657 100644 --- a/tests/attributes/spec/invalid/plate/well_3groups.json +++ b/tests/attributes/spec/invalid/plate/well_3groups.json @@ -1,6 +1,6 @@ { "ome": { - "version": "0.6dev2", + "version": "0.6.dev2", "plate": { "columns": [ { diff --git a/tests/attributes/spec/invalid/plate/zero_field_count.json b/tests/attributes/spec/invalid/plate/zero_field_count.json index e4711bbf..0995f29b 100644 --- a/tests/attributes/spec/invalid/plate/zero_field_count.json +++ b/tests/attributes/spec/invalid/plate/zero_field_count.json @@ -1,6 +1,6 @@ { "ome": { - "version": "0.6dev2", + "version": "0.6.dev2", "plate": { "columns": [ { diff --git a/tests/attributes/spec/valid/image/custom_type_axes.json b/tests/attributes/spec/valid/image/custom_type_axes.json index 4a85dff4..3450f0aa 100644 --- a/tests/attributes/spec/valid/image/custom_type_axes.json +++ b/tests/attributes/spec/valid/image/custom_type_axes.json @@ -1,6 +1,6 @@ { "ome": { - "version": "0.6dev2", + "version": "0.6.dev22", "multiscales": [ { "coordinateSystems": [ diff --git a/tests/attributes/spec/valid/image/invalid_axis_units.json b/tests/attributes/spec/valid/image/invalid_axis_units.json index adcd6d56..dab30483 100644 --- a/tests/attributes/spec/valid/image/invalid_axis_units.json +++ b/tests/attributes/spec/valid/image/invalid_axis_units.json @@ -1,6 +1,6 @@ { "ome": { - "version": "0.6dev2", + "version": "0.6.dev2", "multiscales": [ { "coordinateSystems": [ diff --git a/tests/attributes/spec/valid/image/mismatch_axes_units.json b/tests/attributes/spec/valid/image/mismatch_axes_units.json index b6858b3e..0bb4cf2c 100644 --- a/tests/attributes/spec/valid/image/mismatch_axes_units.json +++ b/tests/attributes/spec/valid/image/mismatch_axes_units.json @@ -1,6 +1,6 @@ { "ome": { - "version": "0.6dev2", + "version": "0.6.dev2", "multiscales": [ { "coordinateSystems": [ diff --git a/tests/attributes/spec/valid/image/missing_name.json b/tests/attributes/spec/valid/image/missing_name.json index 8c67809c..7a136f17 100644 --- a/tests/attributes/spec/valid/image/missing_name.json +++ b/tests/attributes/spec/valid/image/missing_name.json @@ -1,6 +1,6 @@ { "ome": { - "version": "0.6dev2", + "version": "0.6.dev2", "multiscales": [ { "datasets": [ diff --git a/tests/attributes/spec/valid/image/untyped_axes.json b/tests/attributes/spec/valid/image/untyped_axes.json index 6ba8971e..76c2472e 100644 --- a/tests/attributes/spec/valid/image/untyped_axes.json +++ b/tests/attributes/spec/valid/image/untyped_axes.json @@ -1,6 +1,6 @@ { "ome": { - "version": "0.6dev2", + "version": "0.6.dev2", "multiscales": [ { "coordinateSystems": [ diff --git a/tests/attributes/spec/valid/label/minimal.json b/tests/attributes/spec/valid/label/minimal.json index e5665020..f8983b1b 100644 --- a/tests/attributes/spec/valid/label/minimal.json +++ b/tests/attributes/spec/valid/label/minimal.json @@ -1,6 +1,6 @@ { "ome": { - "version": "0.6dev2", + "version": "0.6.dev2", "image-label": { "colors": [ { diff --git a/tests/attributes/spec/valid/label/minimal_properties.json b/tests/attributes/spec/valid/label/minimal_properties.json index 6b953315..29822a2a 100644 --- a/tests/attributes/spec/valid/label/minimal_properties.json +++ b/tests/attributes/spec/valid/label/minimal_properties.json @@ -1,6 +1,6 @@ { "ome": { - "version": "0.6dev2", + "version": "0.6.dev2", "image-label": { "colors": [ { diff --git a/tests/attributes/spec/valid/plate/minimal_acquisitions.json b/tests/attributes/spec/valid/plate/minimal_acquisitions.json index b7292dfc..119bde45 100644 --- a/tests/attributes/spec/valid/plate/minimal_acquisitions.json +++ b/tests/attributes/spec/valid/plate/minimal_acquisitions.json @@ -1,6 +1,6 @@ { "ome": { - "version": "0.6dev2", + "version": "0.6.dev2", "plate": { "acquisitions": [ { diff --git a/tests/attributes/spec/valid/plate/minimal_no_acquisitions.json b/tests/attributes/spec/valid/plate/minimal_no_acquisitions.json index 22585975..ea61c1cf 100644 --- a/tests/attributes/spec/valid/plate/minimal_no_acquisitions.json +++ b/tests/attributes/spec/valid/plate/minimal_no_acquisitions.json @@ -1,6 +1,6 @@ { "ome": { - "version": "0.6dev2", + "version": "0.6.dev2", "plate": { "columns": [ { diff --git a/tests/attributes/spec/valid/plate/non_alphanumeric_row.json b/tests/attributes/spec/valid/plate/non_alphanumeric_row.json index 6764a05f..2d35a8c7 100644 --- a/tests/attributes/spec/valid/plate/non_alphanumeric_row.json +++ b/tests/attributes/spec/valid/plate/non_alphanumeric_row.json @@ -1,6 +1,6 @@ { "ome": { - "version": "0.6dev2", + "version": "0.6.dev2", "plate": { "columns": [ { diff --git a/tests/attributes/spec/valid/well/minimal_acquisitions.json b/tests/attributes/spec/valid/well/minimal_acquisitions.json index b3af1bbf..75781595 100644 --- a/tests/attributes/spec/valid/well/minimal_acquisitions.json +++ b/tests/attributes/spec/valid/well/minimal_acquisitions.json @@ -1,6 +1,6 @@ { "ome": { - "version": "0.6dev2", + "version": "0.6.dev2", "well": { "images": [ { diff --git a/tests/attributes/spec/valid/well/minimal_no_acquisition.json b/tests/attributes/spec/valid/well/minimal_no_acquisition.json index a7bc5449..f17e04d7 100644 --- a/tests/attributes/spec/valid/well/minimal_no_acquisition.json +++ b/tests/attributes/spec/valid/well/minimal_no_acquisition.json @@ -1,6 +1,6 @@ { "ome": { - "version": "0.6dev2", + "version": "0.6.dev2", "well": { "images": [ { diff --git a/tests/attributes/strict/invalid/label/no_colors.json b/tests/attributes/strict/invalid/label/no_colors.json index ddef8c81..b74a2087 100644 --- a/tests/attributes/strict/invalid/label/no_colors.json +++ b/tests/attributes/strict/invalid/label/no_colors.json @@ -1,6 +1,6 @@ { "ome": { - "version": "0.6dev2", + "version": "0.6.dev2", "image-label": {} }, "_conformance": { diff --git a/tests/attributes/strict/invalid/plate/missing_acquisition_maximumfieldcount.json b/tests/attributes/strict/invalid/plate/missing_acquisition_maximumfieldcount.json index 3dd4d6b4..41f4749e 100644 --- a/tests/attributes/strict/invalid/plate/missing_acquisition_maximumfieldcount.json +++ b/tests/attributes/strict/invalid/plate/missing_acquisition_maximumfieldcount.json @@ -1,6 +1,6 @@ { "ome": { - "version": "0.6dev2", + "version": "0.6.dev22", "plate": { "acquisitions": [ { diff --git a/tests/attributes/strict/invalid/plate/missing_acquisition_name.json b/tests/attributes/strict/invalid/plate/missing_acquisition_name.json index 650b7d10..4929c2d2 100644 --- a/tests/attributes/strict/invalid/plate/missing_acquisition_name.json +++ b/tests/attributes/strict/invalid/plate/missing_acquisition_name.json @@ -1,6 +1,6 @@ { "ome": { - "version": "0.6dev2", + "version": "0.6.dev2", "plate": { "acquisitions": [ { diff --git a/tests/attributes/strict/invalid/plate/missing_name.json b/tests/attributes/strict/invalid/plate/missing_name.json index 5154441b..1e608de4 100644 --- a/tests/attributes/strict/invalid/plate/missing_name.json +++ b/tests/attributes/strict/invalid/plate/missing_name.json @@ -1,6 +1,6 @@ { "ome": { - "version": "0.6dev2", + "version": "0.6.dev22", "plate": { "columns": [ { diff --git a/tests/attributes/strict/valid/image/image.json b/tests/attributes/strict/valid/image/image.json index f9676c4c..780d1edf 100644 --- a/tests/attributes/strict/valid/image/image.json +++ b/tests/attributes/strict/valid/image/image.json @@ -1,6 +1,6 @@ { "ome": { - "version": "0.6dev2", + "version": "0.6.dev2", "multiscales": [ { "coordinateSystems": [ diff --git a/tests/attributes/strict/valid/image/image_metadata.json b/tests/attributes/strict/valid/image/image_metadata.json index 6610d1ae..239d749f 100644 --- a/tests/attributes/strict/valid/image/image_metadata.json +++ b/tests/attributes/strict/valid/image/image_metadata.json @@ -1,6 +1,6 @@ { "ome": { - "version": "0.6dev2", + "version": "0.6.dev2", "@id": "top", "@type": "ngff:Image", "multiscales": [ diff --git a/tests/attributes/strict/valid/image/image_omero.json b/tests/attributes/strict/valid/image/image_omero.json index 29171ad0..bda5ae01 100644 --- a/tests/attributes/strict/valid/image/image_omero.json +++ b/tests/attributes/strict/valid/image/image_omero.json @@ -1,6 +1,6 @@ { "ome": { - "version": "0.6dev2", + "version": "0.6.dev2", "multiscales": [ { "coordinateSystems": [ @@ -155,7 +155,7 @@ "defaultZ": 2, "model": "color" }, - "version": "0.6dev2" + "version": "0.6.dev2" } }, "_conformance": { diff --git a/tests/attributes/strict/valid/image/multiscales_example.json b/tests/attributes/strict/valid/image/multiscales_example.json index 4e84a775..9eba7550 100644 --- a/tests/attributes/strict/valid/image/multiscales_example.json +++ b/tests/attributes/strict/valid/image/multiscales_example.json @@ -1,6 +1,6 @@ { "ome": { - "version": "0.6dev2", + "version": "0.6.dev2", "multiscales": [ { "name": "example", diff --git a/tests/attributes/strict/valid/image/multiscales_transformations.json b/tests/attributes/strict/valid/image/multiscales_transformations.json index 676d412e..d35b5385 100644 --- a/tests/attributes/strict/valid/image/multiscales_transformations.json +++ b/tests/attributes/strict/valid/image/multiscales_transformations.json @@ -1,6 +1,6 @@ { "ome": { - "version": "0.6dev2", + "version": "0.6.dev2", "multiscales": [ { "coordinateSystems": [ diff --git a/tests/attributes/strict/valid/plate/strict_acquisitions.json b/tests/attributes/strict/valid/plate/strict_acquisitions.json index 259cca79..2dd5e665 100644 --- a/tests/attributes/strict/valid/plate/strict_acquisitions.json +++ b/tests/attributes/strict/valid/plate/strict_acquisitions.json @@ -1,6 +1,6 @@ { "ome": { - "version": "0.6dev2", + "version": "0.6.dev2", "plate": { "acquisitions": [ { diff --git a/tests/attributes/strict/valid/plate/strict_no_acquisitions.json b/tests/attributes/strict/valid/plate/strict_no_acquisitions.json index 06755fac..244c72ca 100644 --- a/tests/attributes/strict/valid/plate/strict_no_acquisitions.json +++ b/tests/attributes/strict/valid/plate/strict_no_acquisitions.json @@ -1,6 +1,6 @@ { "ome": { - "version": "0.6dev2", + "version": "0.6.dev2", "plate": { "columns": [ { diff --git a/tests/attributes/strict/valid/well/strict_acquisitions.json b/tests/attributes/strict/valid/well/strict_acquisitions.json index 6d5aa968..b7bfc2b7 100644 --- a/tests/attributes/strict/valid/well/strict_acquisitions.json +++ b/tests/attributes/strict/valid/well/strict_acquisitions.json @@ -1,6 +1,6 @@ { "ome": { - "version": "0.6dev2", + "version": "0.6.dev2", "well": { "images": [ { diff --git a/tests/attributes/strict/valid/well/strict_no_acquisitions.json b/tests/attributes/strict/valid/well/strict_no_acquisitions.json index 4cca4f36..14dd1d64 100644 --- a/tests/attributes/strict/valid/well/strict_no_acquisitions.json +++ b/tests/attributes/strict/valid/well/strict_no_acquisitions.json @@ -1,6 +1,6 @@ { "ome": { - "version": "0.6dev2", + "version": "0.6.dev2", "well": { "images": [ { diff --git a/tests/image_suite.json b/tests/image_suite.json index ee80509b..51193440 100644 --- a/tests/image_suite.json +++ b/tests/image_suite.json @@ -9,7 +9,7 @@ "description": "TBD", "data": { "ome": { - "version": "0.6dev2", + "version": "0.6.dev2", "multiscales": [ { "coordinateSystems": [ @@ -58,7 +58,7 @@ "description": "TBD", "data": { "ome": { - "version": "0.6dev2", + "version": "0.6.dev2", "multiscales": [ { "coordinateSystems": [ @@ -105,7 +105,7 @@ "description": "TBD", "data": { "ome": { - "version": "0.6dev2", + "version": "0.6.dev2", "multiscales": [ { "coordinateSystems": [ @@ -150,7 +150,7 @@ "description": "TBD", "data": { "ome": { - "version": "0.6dev2", + "version": "0.6.dev2", "multiscales": [ { "datasets": [ @@ -203,7 +203,7 @@ "description": "TBD", "data": { "ome": { - "version": "0.6dev2", + "version": "0.6.dev2", "multiscales": [ { "coordinateSystems": [ @@ -251,7 +251,7 @@ "description": "TBD", "data": { "ome": { - "version": "0.6dev2", + "version": "0.6.dev2", "multiscales": [ { "coordinateSystems": [ @@ -296,7 +296,7 @@ "description": "TBD", "data": { "ome": { - "version": "0.6dev2", + "version": "0.6.dev2", "multiscales": [ { "coordinateSystems": [ @@ -338,7 +338,7 @@ "description": "TBD", "data": { "ome": { - "version": "0.6dev2", + "version": "0.6.dev2", "multiscales": [ { "coordinateSystems": [ @@ -382,7 +382,7 @@ "description": "TBD", "data": { "ome": { - "version": "0.6dev2", + "version": "0.6.dev2", "multiscales": [ { "coordinateSystems": [ @@ -426,7 +426,7 @@ "description": "TBD", "data": { "ome": { - "version": "0.6dev2", + "version": "0.6.dev2", "multiscales": [ { "coordinateSystems": [ @@ -484,7 +484,7 @@ "description": "TBD", "data": { "ome": { - "version": "0.6dev2", + "version": "0.6.dev2", "multiscales": [ { "coordinateSystems": [ @@ -545,7 +545,7 @@ "description": "TBD", "data": { "ome": { - "version": "0.6dev2", + "version": "0.6.dev2", "multiscales": [ { "coordinateSystems": [ @@ -587,7 +587,7 @@ "description": "TBD", "data": { "ome": { - "version": "0.6dev2", + "version": "0.6.dev2", "multiscales": [ { "coordinateSystems": [ @@ -626,7 +626,7 @@ "description": "TBD", "data": { "ome": { - "version": "0.6dev2", + "version": "0.6.dev2", "multiscales": [ { "coordinateSystems": [ @@ -672,7 +672,7 @@ "description": "TBD", "data": { "ome": { - "version": "0.6dev2", + "version": "0.6.dev2", "multiscales": [ { "coordinateSystems": [ @@ -716,7 +716,7 @@ "description": "TBD", "data": { "ome": { - "version": "0.6dev2", + "version": "0.6.dev2", "multiscales": [ { "coordinateSystems": [ @@ -766,7 +766,7 @@ "description": "TBD", "data": { "ome": { - "version": "0.6dev2", + "version": "0.6.dev2", "multiscales": [ { "coordinateSystems": [ @@ -802,7 +802,7 @@ "description": "TBD", "data": { "ome": { - "version": "0.6dev2", + "version": "0.6.dev2", "multiscales": [ { "coordinateSystems": [ @@ -834,7 +834,7 @@ "description": "TBD", "data": { "ome": { - "version": "0.6dev2", + "version": "0.6.dev2", "multiscales": [ { "coordinateSystems": [ @@ -865,7 +865,7 @@ "description": "TBD", "data": { "ome": { - "version": "0.6dev2", + "version": "0.6.dev2", "multiscales": [ { "datasets": [ @@ -892,7 +892,7 @@ "description": "TBD", "data": { "ome": { - "version": "0.6dev2", + "version": "0.6.dev2", "multiscales": [ { "coordinateSystems": [ @@ -936,7 +936,7 @@ "description": "TBD", "data": { "ome": { - "version": "0.6dev2", + "version": "0.6.dev2", "multiscales": [ { "coordinateSystems": [ @@ -986,7 +986,7 @@ "description": "TBD", "data": { "ome": { - "version": "0.6dev2", + "version": "0.6.dev2", "multiscales": [ { "axes": [], @@ -1014,7 +1014,7 @@ "description": "TBD", "data": { "ome": { - "version": "0.6dev2", + "version": "0.6.dev2", "multiscales": [ { "coordinateSystems": [ @@ -1064,7 +1064,7 @@ "description": "TBD", "data": { "ome": { - "version": "0.6dev2", + "version": "0.6.dev2", "multiscales": [] } }, @@ -1075,7 +1075,7 @@ "description": "TBD", "data": { "ome": { - "version": "0.6dev2", + "version": "0.6.dev2", "multiscales": [ { "coordinateSystems": [ @@ -1136,7 +1136,7 @@ "description": "TBD", "data": { "ome": { - "version": "0.6dev2", + "version": "0.6.dev2", "multiscales": [ { "coordinateSystems": [ @@ -1174,7 +1174,7 @@ "description": "TBD", "data": { "ome": { - "version": "0.6dev2", + "version": "0.6.dev2", "multiscales": [ { "coordinateSystems": [ diff --git a/tests/label_suite.json b/tests/label_suite.json index ceeb9842..227e924e 100644 --- a/tests/label_suite.json +++ b/tests/label_suite.json @@ -8,7 +8,7 @@ "formerly": "image-label/minimal", "data": { "ome": { - "version": "0.6dev2", + "version": "0.6.dev2", "image-label": { "colors": [ { @@ -25,7 +25,7 @@ "formerly": "image-label/minimal_properties", "data": { "ome": { - "version": "0.6dev2", + "version": "0.6.dev2", "image-label": { "colors": [ { @@ -47,7 +47,7 @@ "formerly": "image-label/empty_colors", "data": { "ome": { - "version": "0.6dev2", + "version": "0.6.dev2", "image-label": { "colors": [] } @@ -59,7 +59,7 @@ "formerly": "image-label/empty_properties", "data": { "ome": { - "version": "0.6dev2", + "version": "0.6.dev2", "image-label": { "properties": [] } @@ -71,7 +71,7 @@ "formerly": "image-label/colors_no_label_value", "data": { "ome": { - "version": "0.6dev2", + "version": "0.6.dev2", "image-label": { "colors": [ { @@ -87,7 +87,7 @@ "formerly": "image-label/properties_no_label_value", "data": { "ome": { - "version": "0.6dev2", + "version": "0.6.dev2", "image-label": { "properties": [ { @@ -103,7 +103,7 @@ "formerly": "image-label/colors_rgba_length", "data": { "ome": { - "version": "0.6dev2", + "version": "0.6.dev2", "image-label": { "colors": [ { @@ -120,7 +120,7 @@ "formerly": "image-label/colors_rgba_type", "data": { "ome": { - "version": "0.6dev2", + "version": "0.6.dev2", "image-label": { "colors": [ { @@ -137,7 +137,7 @@ "formerly": "image-label/colors_duplicate", "data": { "ome": { - "version": "0.6dev2", + "version": "0.6.dev2", "image-label": { "colors": [ { diff --git a/tests/plate_suite.json b/tests/plate_suite.json index 70bbf3ff..19bc8e08 100644 --- a/tests/plate_suite.json +++ b/tests/plate_suite.json @@ -8,7 +8,7 @@ "formerly": "plate/minimal_no_acquisitions", "data": { "ome": { - "version": "0.6dev2", + "version": "0.6.dev2", "plate": { "columns": [ { @@ -36,7 +36,7 @@ "formerly": "plate/minimal_acquisitions", "data": { "ome": { - "version": "0.6dev2", + "version": "0.6.dev2", "plate": { "acquisitions": [ { @@ -69,7 +69,7 @@ "formerly": "plate/missing_rows", "data": { "ome": { - "version": "0.6dev2", + "version": "0.6.dev2", "plate": { "columns": [ { @@ -92,7 +92,7 @@ "formerly": "plate/empty_rows", "data": { "ome": { - "version": "0.6dev2", + "version": "0.6.dev2", "plate": { "columns": [ { @@ -116,7 +116,7 @@ "formerly": "plate/duplicate_rows", "data": { "ome": { - "version": "0.6dev2", + "version": "0.6.dev2", "plate": { "columns": [ { @@ -147,7 +147,7 @@ "formerly": "plate/missing_columns", "data": { "ome": { - "version": "0.6dev2", + "version": "0.6.dev2", "plate": { "rows": [ { @@ -170,7 +170,7 @@ "formerly": "plate/empty_columns", "data": { "ome": { - "version": "0.6dev2", + "version": "0.6.dev2", "plate": { "columns": [], "rows": [ @@ -194,7 +194,7 @@ "formerly": "plate/duplicate_columns", "data": { "ome": { - "version": "0.6dev2", + "version": "0.6.dev2", "plate": { "columns": [ { @@ -225,7 +225,7 @@ "formerly": "plate/missing_wells", "data": { "ome": { - "version": "0.6dev2", + "version": "0.6.dev2", "plate": { "columns": [ { @@ -246,7 +246,7 @@ "formerly": "plate/empty_wells", "data": { "ome": { - "version": "0.6dev2", + "version": "0.6.dev2", "plate": { "columns": [ { @@ -268,7 +268,7 @@ "formerly": "plate/duplicate_rows", "data": { "ome": { - "version": "0.6dev2", + "version": "0.6.dev2", "plate": { "columns": [ { @@ -304,7 +304,7 @@ "formerly": "plate/missing_column_name", "data": { "ome": { - "version": "0.6dev2", + "version": "0.6.dev2", "plate": { "columns": [ { @@ -332,7 +332,7 @@ "formerly": "plate/missing_row_name", "data": { "ome": { - "version": "0.6dev2", + "version": "0.6.dev2", "plate": { "columns": [ { @@ -360,7 +360,7 @@ "formerly": "plate/missing_well_path", "data": { "ome": { - "version": "0.6dev2", + "version": "0.6.dev2", "plate": { "columns": [ { @@ -387,7 +387,7 @@ "formerly": "plate/missing_well_rowIndex", "data": { "ome": { - "version": "0.6dev2", + "version": "0.6.dev2", "plate": { "columns": [ { @@ -414,7 +414,7 @@ "formerly": "plate/missing_well_columnIndex", "data": { "ome": { - "version": "0.6dev2", + "version": "0.6.dev2", "plate": { "columns": [ { @@ -441,7 +441,7 @@ "formerly": "plate/well_1group", "data": { "ome": { - "version": "0.6dev2", + "version": "0.6.dev2", "plate": { "columns": [ { @@ -468,7 +468,7 @@ "formerly": "plate/well_3groups", "data": { "ome": { - "version": "0.6dev2", + "version": "0.6.dev2", "plate": { "columns": [ { @@ -495,7 +495,7 @@ "formerly": "plate/non_alphanumeric_column", "data": { "ome": { - "version": "0.6dev2", + "version": "0.6.dev2", "plate": { "columns": [ { @@ -523,7 +523,7 @@ "formerly": "plate/non_alphanumeric_row", "data": { "ome": { - "version": "0.6dev2", + "version": "0.6.dev2", "plate": { "columns": [ { @@ -551,7 +551,7 @@ "formerly": "plate/missing_acquisition_id", "data": { "ome": { - "version": "0.6dev2", + "version": "0.6.dev2", "plate": { "acquisitions": [ { @@ -584,7 +584,7 @@ "formerly": "plate/non_integer_acquisition_id", "data": { "ome": { - "version": "0.6dev2", + "version": "0.6.dev2", "plate": { "acquisitions": [ { @@ -617,7 +617,7 @@ "formerly": "plate/negative_acquisition_id", "data": { "ome": { - "version": "0.6dev2", + "version": "0.6.dev2", "plate": { "acquisitions": [ { @@ -650,7 +650,7 @@ "formerly": "plate/non_integer_acquisition_maximumfieldcount", "data": { "ome": { - "version": "0.6dev2", + "version": "0.6.dev2", "plate": { "acquisitions": [ { @@ -684,7 +684,7 @@ "formerly": "plate/acquisition_zero_maximumfieldcount", "data": { "ome": { - "version": "0.6dev2", + "version": "0.6.dev2", "plate": { "acquisitions": [ { @@ -718,7 +718,7 @@ "formerly": "plate/acquisition_noninteger_starttime", "data": { "ome": { - "version": "0.6dev2", + "version": "0.6.dev2", "plate": { "acquisitions": [ { @@ -752,7 +752,7 @@ "formerly": "plate/acquisition_negative_starttime", "data": { "ome": { - "version": "0.6dev2", + "version": "0.6.dev2", "plate": { "acquisitions": [ { @@ -786,7 +786,7 @@ "formerly": "plate/acquisition_noninteger_endtime", "data": { "ome": { - "version": "0.6dev2", + "version": "0.6.dev2", "plate": { "acquisitions": [ { @@ -820,7 +820,7 @@ "formerly": "plate/negative_endtime", "data": { "ome": { - "version": "0.6dev2", + "version": "0.6.dev2", "plate": { "acquisitions": [ { @@ -854,7 +854,7 @@ "formerly": "plate/zero_field_count", "data": { "ome": { - "version": "0.6dev2", + "version": "0.6.dev2", "plate": { "columns": [ { diff --git a/tests/strict_image_suite.json b/tests/strict_image_suite.json index 486f936c..adc33f55 100644 --- a/tests/strict_image_suite.json +++ b/tests/strict_image_suite.json @@ -9,7 +9,7 @@ "description": "TBD", "data": { "ome": { - "version": "0.6dev2", + "version": "0.6.dev2", "multiscales": [ { "name": "example", @@ -138,7 +138,7 @@ "description": "TBD", "data": { "ome": { - "version": "0.6dev2", + "version": "0.6.dev2", "multiscales": [ { "coordinateSystems": [ @@ -210,7 +210,7 @@ "description": "TBD", "data": { "ome": { - "version": "0.6dev2", + "version": "0.6.dev2", "@id": "top", "@type": "ngff:Image", "multiscales": [ @@ -267,7 +267,7 @@ "description": "TBD", "data": { "ome": { - "version": "0.6dev2", + "version": "0.6.dev2", "multiscales": [ { "coordinateSystems": [ @@ -316,7 +316,7 @@ "description": "TBD", "data": { "ome": { - "version": "0.6dev2", + "version": "0.6.dev2", "multiscales": [ { "coordinateSystems": [ @@ -453,7 +453,7 @@ "defaultZ": 2, "model": "color" }, - "version": "0.6dev2" + "version": "0.6.dev2" } } }, diff --git a/tests/strict_label_suite.json b/tests/strict_label_suite.json index d72dc241..7cc9d4c0 100644 --- a/tests/strict_label_suite.json +++ b/tests/strict_label_suite.json @@ -8,7 +8,7 @@ "formerly": "image-label/no_colors", "data": { "ome": { - "version": "0.6dev2", + "version": "0.6.dev2", "image-label": {} } }, diff --git a/tests/strict_plate_suite.json b/tests/strict_plate_suite.json index 7a994108..dbba40b5 100644 --- a/tests/strict_plate_suite.json +++ b/tests/strict_plate_suite.json @@ -8,7 +8,7 @@ "formerly": "plate/strict_no_acquisitions", "data": { "ome": { - "version": "0.6dev2", + "version": "0.6.dev2", "plate": { "columns": [ { @@ -37,7 +37,7 @@ "formerly": "plate/missing_name", "data": { "ome": { - "version": "0.6dev2", + "version": "0.6.dev2", "plate": { "columns": [ { @@ -65,7 +65,7 @@ "formerly": "plate/strict_acquisitions", "data": { "ome": { - "version": "0.6dev2", + "version": "0.6.dev2", "plate": { "acquisitions": [ { @@ -101,7 +101,7 @@ "formerly": "plate/missing_acquisition_name", "data": { "ome": { - "version": "0.6dev2", + "version": "0.6.dev2", "plate": { "acquisitions": [ { @@ -136,7 +136,7 @@ "formerly": "plate/missing_acquisition_maximumfieldcount", "data": { "ome": { - "version": "0.6dev2", + "version": "0.6.dev2", "plate": { "acquisitions": [ { diff --git a/tests/strict_well_suite.json b/tests/strict_well_suite.json index ee10a2c0..371b8684 100644 --- a/tests/strict_well_suite.json +++ b/tests/strict_well_suite.json @@ -8,7 +8,7 @@ "formerly": "well/strict_no_acquisitions", "data": { "ome": { - "version": "0.6dev2", + "version": "0.6.dev2", "well": { "images": [ { @@ -24,7 +24,7 @@ "formerly": "plate/strict_acquisitions", "data": { "ome": { - "version": "0.6dev2", + "version": "0.6.dev2", "well": { "images": [ { diff --git a/tests/test_validation.py b/tests/test_validation.py index e075054c..b4d397e6 100644 --- a/tests/test_validation.py +++ b/tests/test_validation.py @@ -17,10 +17,10 @@ schema_store[schema["$id"]] = schema GENERIC_SCHEMA = schema_store[ - "https://ngff.openmicroscopy.org/0.6dev2/schemas/ome_zarr.schema" + "https://ngff.openmicroscopy.org/0.6.dev2/schemas/ome_zarr.schema" ] GENERIC_STRICT_SCHEMA = schema_store[ - "https://ngff.openmicroscopy.org/0.6dev2/schemas/strict_ome_zarr.schema" + "https://ngff.openmicroscopy.org/0.6.dev2/schemas/strict_ome_zarr.schema" ] diff --git a/tests/well_suite.json b/tests/well_suite.json index 9f9fe663..2664649c 100644 --- a/tests/well_suite.json +++ b/tests/well_suite.json @@ -8,7 +8,7 @@ "formerly": "well/minimal_no_acquisition", "data": { "ome": { - "version": "0.6dev2", + "version": "0.6.dev2", "well": { "images": [ { @@ -24,7 +24,7 @@ "formerly": "well/minimal_acquisitions", "data": { "ome": { - "version": "0.6dev2", + "version": "0.6.dev2", "well": { "images": [ { diff --git a/tests/zarr/spec/invalid/image/duplicate_axes.ome.zarr/zarr.json b/tests/zarr/spec/invalid/image/duplicate_axes.ome.zarr/zarr.json index 8ab98fd1..373da8a9 100644 --- a/tests/zarr/spec/invalid/image/duplicate_axes.ome.zarr/zarr.json +++ b/tests/zarr/spec/invalid/image/duplicate_axes.ome.zarr/zarr.json @@ -3,7 +3,7 @@ "node_type": "group", "attributes": { "ome": { - "version": "0.6dev2", + "version": "0.6.dev2", "multiscales": [ { "coordinateSystems": [ diff --git a/tests/zarr/spec/invalid/image/duplicate_scale.ome.zarr/zarr.json b/tests/zarr/spec/invalid/image/duplicate_scale.ome.zarr/zarr.json index 368da4a8..bc5212bc 100644 --- a/tests/zarr/spec/invalid/image/duplicate_scale.ome.zarr/zarr.json +++ b/tests/zarr/spec/invalid/image/duplicate_scale.ome.zarr/zarr.json @@ -3,7 +3,7 @@ "node_type": "group", "attributes": { "ome": { - "version": "0.6dev2", + "version": "0.6.dev2", "multiscales": [ { "coordinateSystems": [ diff --git a/tests/zarr/spec/invalid/image/empty_transformations.ome.zarr/zarr.json b/tests/zarr/spec/invalid/image/empty_transformations.ome.zarr/zarr.json index 27849119..1228edfe 100644 --- a/tests/zarr/spec/invalid/image/empty_transformations.ome.zarr/zarr.json +++ b/tests/zarr/spec/invalid/image/empty_transformations.ome.zarr/zarr.json @@ -3,7 +3,7 @@ "node_type": "group", "attributes": { "ome": { - "version": "0.6dev2", + "version": "0.6.dev2", "multiscales": [ { "coordinateSystems": [ diff --git a/tests/zarr/spec/invalid/image/invalid_axes_count.ome.zarr/zarr.json b/tests/zarr/spec/invalid/image/invalid_axes_count.ome.zarr/zarr.json index 8a4cedb9..b27e9e7e 100644 --- a/tests/zarr/spec/invalid/image/invalid_axes_count.ome.zarr/zarr.json +++ b/tests/zarr/spec/invalid/image/invalid_axes_count.ome.zarr/zarr.json @@ -3,7 +3,7 @@ "node_type": "group", "attributes": { "ome": { - "version": "0.6dev2", + "version": "0.6.dev2", "multiscales": [ { "coordinateSystems": [ diff --git a/tests/zarr/spec/invalid/image/invalid_axis_type.ome.zarr/zarr.json b/tests/zarr/spec/invalid/image/invalid_axis_type.ome.zarr/zarr.json index f8670822..17df1d79 100644 --- a/tests/zarr/spec/invalid/image/invalid_axis_type.ome.zarr/zarr.json +++ b/tests/zarr/spec/invalid/image/invalid_axis_type.ome.zarr/zarr.json @@ -3,7 +3,7 @@ "node_type": "group", "attributes": { "ome": { - "version": "0.6dev2", + "version": "0.6.dev2", "multiscales": [ { "coordinateSystems": [ diff --git a/tests/zarr/spec/invalid/image/invalid_channels_color.ome.zarr/zarr.json b/tests/zarr/spec/invalid/image/invalid_channels_color.ome.zarr/zarr.json index 1df35e4b..82614d3a 100644 --- a/tests/zarr/spec/invalid/image/invalid_channels_color.ome.zarr/zarr.json +++ b/tests/zarr/spec/invalid/image/invalid_channels_color.ome.zarr/zarr.json @@ -3,7 +3,7 @@ "node_type": "group", "attributes": { "ome": { - "version": "0.6dev2", + "version": "0.6.dev2", "multiscales": [ { "coordinateSystems": [ diff --git a/tests/zarr/spec/invalid/image/invalid_channels_window.ome.zarr/zarr.json b/tests/zarr/spec/invalid/image/invalid_channels_window.ome.zarr/zarr.json index 99cfeaa8..b3445ac5 100644 --- a/tests/zarr/spec/invalid/image/invalid_channels_window.ome.zarr/zarr.json +++ b/tests/zarr/spec/invalid/image/invalid_channels_window.ome.zarr/zarr.json @@ -3,7 +3,7 @@ "node_type": "group", "attributes": { "ome": { - "version": "0.6dev2", + "version": "0.6.dev2", "multiscales": [ { "coordinateSystems": [ diff --git a/tests/zarr/spec/invalid/image/invalid_multiscales_transformations.ome.zarr/zarr.json b/tests/zarr/spec/invalid/image/invalid_multiscales_transformations.ome.zarr/zarr.json index 5cb869b5..78c9a82f 100644 --- a/tests/zarr/spec/invalid/image/invalid_multiscales_transformations.ome.zarr/zarr.json +++ b/tests/zarr/spec/invalid/image/invalid_multiscales_transformations.ome.zarr/zarr.json @@ -3,7 +3,7 @@ "node_type": "group", "attributes": { "ome": { - "version": "0.6dev2", + "version": "0.6.dev2", "multiscales": [ { "coordinateSystems": [ diff --git a/tests/zarr/spec/invalid/image/invalid_path.ome.zarr/zarr.json b/tests/zarr/spec/invalid/image/invalid_path.ome.zarr/zarr.json index 269af0d1..1334dbe8 100644 --- a/tests/zarr/spec/invalid/image/invalid_path.ome.zarr/zarr.json +++ b/tests/zarr/spec/invalid/image/invalid_path.ome.zarr/zarr.json @@ -3,7 +3,7 @@ "node_type": "group", "attributes": { "ome": { - "version": "0.6dev2", + "version": "0.6.dev2", "multiscales": [ { "coordinateSystems": [ diff --git a/tests/zarr/spec/invalid/image/invalid_transformation_type.ome.zarr/zarr.json b/tests/zarr/spec/invalid/image/invalid_transformation_type.ome.zarr/zarr.json index 9aa05e61..4c3881d3 100644 --- a/tests/zarr/spec/invalid/image/invalid_transformation_type.ome.zarr/zarr.json +++ b/tests/zarr/spec/invalid/image/invalid_transformation_type.ome.zarr/zarr.json @@ -3,7 +3,7 @@ "node_type": "group", "attributes": { "ome": { - "version": "0.6dev2", + "version": "0.6.dev2", "multiscales": [ { "coordinateSystems": [ diff --git a/tests/zarr/spec/invalid/image/missing_axes.ome.zarr/zarr.json b/tests/zarr/spec/invalid/image/missing_axes.ome.zarr/zarr.json index b70a3bd7..28765265 100644 --- a/tests/zarr/spec/invalid/image/missing_axes.ome.zarr/zarr.json +++ b/tests/zarr/spec/invalid/image/missing_axes.ome.zarr/zarr.json @@ -3,7 +3,7 @@ "node_type": "group", "attributes": { "ome": { - "version": "0.6dev2", + "version": "0.6.dev2", "multiscales": [ { "datasets": [ diff --git a/tests/zarr/spec/invalid/image/missing_axes_name.ome.zarr/zarr.json b/tests/zarr/spec/invalid/image/missing_axes_name.ome.zarr/zarr.json index 0dc2c7cb..a45f3476 100644 --- a/tests/zarr/spec/invalid/image/missing_axes_name.ome.zarr/zarr.json +++ b/tests/zarr/spec/invalid/image/missing_axes_name.ome.zarr/zarr.json @@ -3,7 +3,7 @@ "node_type": "group", "attributes": { "ome": { - "version": "0.6dev2", + "version": "0.6.dev2", "multiscales": [ { "coordinateSystems": [ diff --git a/tests/zarr/spec/invalid/image/missing_datasets.ome.zarr/zarr.json b/tests/zarr/spec/invalid/image/missing_datasets.ome.zarr/zarr.json index 1bdf3fd7..f953b07e 100644 --- a/tests/zarr/spec/invalid/image/missing_datasets.ome.zarr/zarr.json +++ b/tests/zarr/spec/invalid/image/missing_datasets.ome.zarr/zarr.json @@ -3,7 +3,7 @@ "node_type": "group", "attributes": { "ome": { - "version": "0.6dev2", + "version": "0.6.dev2", "multiscales": [ { "coordinateSystems": [ diff --git a/tests/zarr/spec/invalid/image/missing_path.ome.zarr/zarr.json b/tests/zarr/spec/invalid/image/missing_path.ome.zarr/zarr.json index 6654cb01..dd891800 100644 --- a/tests/zarr/spec/invalid/image/missing_path.ome.zarr/zarr.json +++ b/tests/zarr/spec/invalid/image/missing_path.ome.zarr/zarr.json @@ -3,7 +3,7 @@ "node_type": "group", "attributes": { "ome": { - "version": "0.6dev2", + "version": "0.6.dev2", "multiscales": [ { "coordinateSystems": [ diff --git a/tests/zarr/spec/invalid/image/missing_scale.ome.zarr/zarr.json b/tests/zarr/spec/invalid/image/missing_scale.ome.zarr/zarr.json index fbd75653..222c48be 100644 --- a/tests/zarr/spec/invalid/image/missing_scale.ome.zarr/zarr.json +++ b/tests/zarr/spec/invalid/image/missing_scale.ome.zarr/zarr.json @@ -3,7 +3,7 @@ "node_type": "group", "attributes": { "ome": { - "version": "0.6dev2", + "version": "0.6.dev2", "multiscales": [ { "coordinateSystems": [ diff --git a/tests/zarr/spec/invalid/image/missing_space_axes.ome.zarr/zarr.json b/tests/zarr/spec/invalid/image/missing_space_axes.ome.zarr/zarr.json index 29270d88..69b41b79 100644 --- a/tests/zarr/spec/invalid/image/missing_space_axes.ome.zarr/zarr.json +++ b/tests/zarr/spec/invalid/image/missing_space_axes.ome.zarr/zarr.json @@ -3,7 +3,7 @@ "node_type": "group", "attributes": { "ome": { - "version": "0.6dev2", + "version": "0.6.dev2", "multiscales": [ { "coordinateSystems": [ diff --git a/tests/zarr/spec/invalid/image/missing_transformations.ome.zarr/zarr.json b/tests/zarr/spec/invalid/image/missing_transformations.ome.zarr/zarr.json index 6b5de047..6d00314b 100644 --- a/tests/zarr/spec/invalid/image/missing_transformations.ome.zarr/zarr.json +++ b/tests/zarr/spec/invalid/image/missing_transformations.ome.zarr/zarr.json @@ -3,7 +3,7 @@ "node_type": "group", "attributes": { "ome": { - "version": "0.6dev2", + "version": "0.6.dev2", "multiscales": [ { "coordinateSystems": [ diff --git a/tests/zarr/spec/invalid/image/no_axes.ome.zarr/zarr.json b/tests/zarr/spec/invalid/image/no_axes.ome.zarr/zarr.json index 49cfb855..9b6c0487 100644 --- a/tests/zarr/spec/invalid/image/no_axes.ome.zarr/zarr.json +++ b/tests/zarr/spec/invalid/image/no_axes.ome.zarr/zarr.json @@ -3,7 +3,7 @@ "node_type": "group", "attributes": { "ome": { - "version": "0.6dev2", + "version": "0.6.dev2", "multiscales": [ { "axes": [], diff --git a/tests/zarr/spec/invalid/image/no_datasets.ome.zarr/zarr.json b/tests/zarr/spec/invalid/image/no_datasets.ome.zarr/zarr.json index 37d83d34..c5933e79 100644 --- a/tests/zarr/spec/invalid/image/no_datasets.ome.zarr/zarr.json +++ b/tests/zarr/spec/invalid/image/no_datasets.ome.zarr/zarr.json @@ -3,7 +3,7 @@ "node_type": "group", "attributes": { "ome": { - "version": "0.6dev2", + "version": "0.6.dev2", "multiscales": [ { "coordinateSystems": [ diff --git a/tests/zarr/spec/invalid/image/no_multiscales.ome.zarr/zarr.json b/tests/zarr/spec/invalid/image/no_multiscales.ome.zarr/zarr.json index c87e03b8..98076bfd 100644 --- a/tests/zarr/spec/invalid/image/no_multiscales.ome.zarr/zarr.json +++ b/tests/zarr/spec/invalid/image/no_multiscales.ome.zarr/zarr.json @@ -3,7 +3,7 @@ "node_type": "group", "attributes": { "ome": { - "version": "0.6dev2", + "version": "0.6.dev2", "multiscales": [] }, "_conformance": { diff --git a/tests/zarr/spec/invalid/image/one_space_axes.ome.zarr/zarr.json b/tests/zarr/spec/invalid/image/one_space_axes.ome.zarr/zarr.json index 6032461e..a001b1ad 100644 --- a/tests/zarr/spec/invalid/image/one_space_axes.ome.zarr/zarr.json +++ b/tests/zarr/spec/invalid/image/one_space_axes.ome.zarr/zarr.json @@ -3,7 +3,7 @@ "node_type": "group", "attributes": { "ome": { - "version": "0.6dev2", + "version": "0.6.dev2", "multiscales": [ { "coordinateSystems": [ diff --git a/tests/zarr/spec/invalid/image/too_many_axes.ome.zarr/zarr.json b/tests/zarr/spec/invalid/image/too_many_axes.ome.zarr/zarr.json index 660a9d12..e4cb9d91 100644 --- a/tests/zarr/spec/invalid/image/too_many_axes.ome.zarr/zarr.json +++ b/tests/zarr/spec/invalid/image/too_many_axes.ome.zarr/zarr.json @@ -3,7 +3,7 @@ "node_type": "group", "attributes": { "ome": { - "version": "0.6dev2", + "version": "0.6.dev2", "multiscales": [ { "coordinateSystems": [ diff --git a/tests/zarr/spec/invalid/image/too_many_space_axes.ome.zarr/zarr.json b/tests/zarr/spec/invalid/image/too_many_space_axes.ome.zarr/zarr.json index e2cdd3c9..3cb03547 100644 --- a/tests/zarr/spec/invalid/image/too_many_space_axes.ome.zarr/zarr.json +++ b/tests/zarr/spec/invalid/image/too_many_space_axes.ome.zarr/zarr.json @@ -3,7 +3,7 @@ "node_type": "group", "attributes": { "ome": { - "version": "0.6dev2", + "version": "0.6.dev2", "multiscales": [ { "coordinateSystems": [ diff --git a/tests/zarr/spec/invalid/label/colors_duplicate.ome.zarr/zarr.json b/tests/zarr/spec/invalid/label/colors_duplicate.ome.zarr/zarr.json index c6da3280..e580c7e9 100644 --- a/tests/zarr/spec/invalid/label/colors_duplicate.ome.zarr/zarr.json +++ b/tests/zarr/spec/invalid/label/colors_duplicate.ome.zarr/zarr.json @@ -3,7 +3,7 @@ "node_type": "group", "attributes": { "ome": { - "version": "0.6dev2", + "version": "0.6.dev2", "image-label": { "colors": [ { diff --git a/tests/zarr/spec/invalid/label/colors_no_label_value.ome.zarr/zarr.json b/tests/zarr/spec/invalid/label/colors_no_label_value.ome.zarr/zarr.json index db7be5a9..ac684ebc 100644 --- a/tests/zarr/spec/invalid/label/colors_no_label_value.ome.zarr/zarr.json +++ b/tests/zarr/spec/invalid/label/colors_no_label_value.ome.zarr/zarr.json @@ -3,7 +3,7 @@ "node_type": "group", "attributes": { "ome": { - "version": "0.6dev2", + "version": "0.6.dev2", "image-label": { "colors": [ { diff --git a/tests/zarr/spec/invalid/label/colors_rgba_length.ome.zarr/zarr.json b/tests/zarr/spec/invalid/label/colors_rgba_length.ome.zarr/zarr.json index a110a049..82421adb 100644 --- a/tests/zarr/spec/invalid/label/colors_rgba_length.ome.zarr/zarr.json +++ b/tests/zarr/spec/invalid/label/colors_rgba_length.ome.zarr/zarr.json @@ -3,7 +3,7 @@ "node_type": "group", "attributes": { "ome": { - "version": "0.6dev2", + "version": "0.6.dev2", "image-label": { "colors": [ { diff --git a/tests/zarr/spec/invalid/label/colors_rgba_type.ome.zarr/zarr.json b/tests/zarr/spec/invalid/label/colors_rgba_type.ome.zarr/zarr.json index 162e08f2..6daea791 100644 --- a/tests/zarr/spec/invalid/label/colors_rgba_type.ome.zarr/zarr.json +++ b/tests/zarr/spec/invalid/label/colors_rgba_type.ome.zarr/zarr.json @@ -3,7 +3,7 @@ "node_type": "group", "attributes": { "ome": { - "version": "0.6dev2", + "version": "0.6.dev2", "image-label": { "colors": [ { diff --git a/tests/zarr/spec/invalid/label/empty_colors.ome.zarr/zarr.json b/tests/zarr/spec/invalid/label/empty_colors.ome.zarr/zarr.json index a6d7181e..7b0f1c7c 100644 --- a/tests/zarr/spec/invalid/label/empty_colors.ome.zarr/zarr.json +++ b/tests/zarr/spec/invalid/label/empty_colors.ome.zarr/zarr.json @@ -3,7 +3,7 @@ "node_type": "group", "attributes": { "ome": { - "version": "0.6dev2", + "version": "0.6.dev2", "image-label": { "colors": [] } diff --git a/tests/zarr/spec/invalid/label/empty_properties.ome.zarr/zarr.json b/tests/zarr/spec/invalid/label/empty_properties.ome.zarr/zarr.json index a4691e59..c3fe5fa5 100644 --- a/tests/zarr/spec/invalid/label/empty_properties.ome.zarr/zarr.json +++ b/tests/zarr/spec/invalid/label/empty_properties.ome.zarr/zarr.json @@ -3,7 +3,7 @@ "node_type": "group", "attributes": { "ome": { - "version": "0.6dev2", + "version": "0.6.dev2", "image-label": { "properties": [] } diff --git a/tests/zarr/spec/invalid/label/properties_no_label_value.ome.zarr/zarr.json b/tests/zarr/spec/invalid/label/properties_no_label_value.ome.zarr/zarr.json index 987d3748..c2b26f5e 100644 --- a/tests/zarr/spec/invalid/label/properties_no_label_value.ome.zarr/zarr.json +++ b/tests/zarr/spec/invalid/label/properties_no_label_value.ome.zarr/zarr.json @@ -3,7 +3,7 @@ "node_type": "group", "attributes": { "ome": { - "version": "0.6dev2", + "version": "0.6.dev2", "image-label": { "properties": [ { diff --git a/tests/zarr/spec/invalid/plate/acquisition_negative_starttime.ome.zarr/zarr.json b/tests/zarr/spec/invalid/plate/acquisition_negative_starttime.ome.zarr/zarr.json index 9687b34e..68255088 100644 --- a/tests/zarr/spec/invalid/plate/acquisition_negative_starttime.ome.zarr/zarr.json +++ b/tests/zarr/spec/invalid/plate/acquisition_negative_starttime.ome.zarr/zarr.json @@ -3,7 +3,7 @@ "node_type": "group", "attributes": { "ome": { - "version": "0.6dev2", + "version": "0.6.dev2", "plate": { "acquisitions": [ { diff --git a/tests/zarr/spec/invalid/plate/acquisition_noninteger_endtime.ome.zarr/zarr.json b/tests/zarr/spec/invalid/plate/acquisition_noninteger_endtime.ome.zarr/zarr.json index eb55a6de..613686fe 100644 --- a/tests/zarr/spec/invalid/plate/acquisition_noninteger_endtime.ome.zarr/zarr.json +++ b/tests/zarr/spec/invalid/plate/acquisition_noninteger_endtime.ome.zarr/zarr.json @@ -3,7 +3,7 @@ "node_type": "group", "attributes": { "ome": { - "version": "0.6dev2", + "version": "0.6.dev2", "plate": { "acquisitions": [ { diff --git a/tests/zarr/spec/invalid/plate/acquisition_noninteger_starttime.ome.zarr/zarr.json b/tests/zarr/spec/invalid/plate/acquisition_noninteger_starttime.ome.zarr/zarr.json index 99b7b66d..2d7e07db 100644 --- a/tests/zarr/spec/invalid/plate/acquisition_noninteger_starttime.ome.zarr/zarr.json +++ b/tests/zarr/spec/invalid/plate/acquisition_noninteger_starttime.ome.zarr/zarr.json @@ -3,7 +3,7 @@ "node_type": "group", "attributes": { "ome": { - "version": "0.6dev2", + "version": "0.6.dev2", "plate": { "acquisitions": [ { diff --git a/tests/zarr/spec/invalid/plate/acquisition_zero_maximumfieldcount.ome.zarr/zarr.json b/tests/zarr/spec/invalid/plate/acquisition_zero_maximumfieldcount.ome.zarr/zarr.json index 85e258b3..44f8a3a1 100644 --- a/tests/zarr/spec/invalid/plate/acquisition_zero_maximumfieldcount.ome.zarr/zarr.json +++ b/tests/zarr/spec/invalid/plate/acquisition_zero_maximumfieldcount.ome.zarr/zarr.json @@ -3,7 +3,7 @@ "node_type": "group", "attributes": { "ome": { - "version": "0.6dev2", + "version": "0.6.dev2", "plate": { "acquisitions": [ { diff --git a/tests/zarr/spec/invalid/plate/duplicate_columns.ome.zarr/zarr.json b/tests/zarr/spec/invalid/plate/duplicate_columns.ome.zarr/zarr.json index c34af3bd..8e9423a9 100644 --- a/tests/zarr/spec/invalid/plate/duplicate_columns.ome.zarr/zarr.json +++ b/tests/zarr/spec/invalid/plate/duplicate_columns.ome.zarr/zarr.json @@ -3,7 +3,7 @@ "node_type": "group", "attributes": { "ome": { - "version": "0.6dev2", + "version": "0.6.dev2", "plate": { "columns": [ { diff --git a/tests/zarr/spec/invalid/plate/duplicate_rows-2.ome.zarr/zarr.json b/tests/zarr/spec/invalid/plate/duplicate_rows-2.ome.zarr/zarr.json index bc3519ff..10e4e463 100644 --- a/tests/zarr/spec/invalid/plate/duplicate_rows-2.ome.zarr/zarr.json +++ b/tests/zarr/spec/invalid/plate/duplicate_rows-2.ome.zarr/zarr.json @@ -3,7 +3,7 @@ "node_type": "group", "attributes": { "ome": { - "version": "0.6dev2", + "version": "0.6.dev2", "plate": { "columns": [ { diff --git a/tests/zarr/spec/invalid/plate/duplicate_rows.ome.zarr/zarr.json b/tests/zarr/spec/invalid/plate/duplicate_rows.ome.zarr/zarr.json index 41bc2918..e0cf6172 100644 --- a/tests/zarr/spec/invalid/plate/duplicate_rows.ome.zarr/zarr.json +++ b/tests/zarr/spec/invalid/plate/duplicate_rows.ome.zarr/zarr.json @@ -3,7 +3,7 @@ "node_type": "group", "attributes": { "ome": { - "version": "0.6dev2", + "version": "0.6.dev2", "plate": { "columns": [ { diff --git a/tests/zarr/spec/invalid/plate/empty_columns.ome.zarr/zarr.json b/tests/zarr/spec/invalid/plate/empty_columns.ome.zarr/zarr.json index fca7de14..cffc2635 100644 --- a/tests/zarr/spec/invalid/plate/empty_columns.ome.zarr/zarr.json +++ b/tests/zarr/spec/invalid/plate/empty_columns.ome.zarr/zarr.json @@ -3,7 +3,7 @@ "node_type": "group", "attributes": { "ome": { - "version": "0.6dev2", + "version": "0.6.dev2", "plate": { "columns": [], "rows": [ diff --git a/tests/zarr/spec/invalid/plate/empty_rows.ome.zarr/zarr.json b/tests/zarr/spec/invalid/plate/empty_rows.ome.zarr/zarr.json index 19133a62..541d026b 100644 --- a/tests/zarr/spec/invalid/plate/empty_rows.ome.zarr/zarr.json +++ b/tests/zarr/spec/invalid/plate/empty_rows.ome.zarr/zarr.json @@ -3,7 +3,7 @@ "node_type": "group", "attributes": { "ome": { - "version": "0.6dev2", + "version": "0.6.dev2", "plate": { "columns": [ { diff --git a/tests/zarr/spec/invalid/plate/empty_wells.ome.zarr/zarr.json b/tests/zarr/spec/invalid/plate/empty_wells.ome.zarr/zarr.json index 2e5e308a..10f18c4b 100644 --- a/tests/zarr/spec/invalid/plate/empty_wells.ome.zarr/zarr.json +++ b/tests/zarr/spec/invalid/plate/empty_wells.ome.zarr/zarr.json @@ -3,7 +3,7 @@ "node_type": "group", "attributes": { "ome": { - "version": "0.6dev2", + "version": "0.6.dev2", "plate": { "columns": [ { diff --git a/tests/zarr/spec/invalid/plate/missing_acquisition_id.ome.zarr/zarr.json b/tests/zarr/spec/invalid/plate/missing_acquisition_id.ome.zarr/zarr.json index d1085f9c..215ee058 100644 --- a/tests/zarr/spec/invalid/plate/missing_acquisition_id.ome.zarr/zarr.json +++ b/tests/zarr/spec/invalid/plate/missing_acquisition_id.ome.zarr/zarr.json @@ -3,7 +3,7 @@ "node_type": "group", "attributes": { "ome": { - "version": "0.6dev2", + "version": "0.6.dev2", "plate": { "acquisitions": [ { diff --git a/tests/zarr/spec/invalid/plate/missing_column_name.ome.zarr/zarr.json b/tests/zarr/spec/invalid/plate/missing_column_name.ome.zarr/zarr.json index 8e433b45..4f63461d 100644 --- a/tests/zarr/spec/invalid/plate/missing_column_name.ome.zarr/zarr.json +++ b/tests/zarr/spec/invalid/plate/missing_column_name.ome.zarr/zarr.json @@ -3,7 +3,7 @@ "node_type": "group", "attributes": { "ome": { - "version": "0.6dev2", + "version": "0.6.dev2", "plate": { "columns": [ { diff --git a/tests/zarr/spec/invalid/plate/missing_columns.ome.zarr/zarr.json b/tests/zarr/spec/invalid/plate/missing_columns.ome.zarr/zarr.json index 635426f6..65478951 100644 --- a/tests/zarr/spec/invalid/plate/missing_columns.ome.zarr/zarr.json +++ b/tests/zarr/spec/invalid/plate/missing_columns.ome.zarr/zarr.json @@ -3,7 +3,7 @@ "node_type": "group", "attributes": { "ome": { - "version": "0.6dev2", + "version": "0.6.dev2", "plate": { "rows": [ { diff --git a/tests/zarr/spec/invalid/plate/missing_row_name.ome.zarr/zarr.json b/tests/zarr/spec/invalid/plate/missing_row_name.ome.zarr/zarr.json index 90ca5f8b..dfdd53c0 100644 --- a/tests/zarr/spec/invalid/plate/missing_row_name.ome.zarr/zarr.json +++ b/tests/zarr/spec/invalid/plate/missing_row_name.ome.zarr/zarr.json @@ -3,7 +3,7 @@ "node_type": "group", "attributes": { "ome": { - "version": "0.6dev2", + "version": "0.6.dev2", "plate": { "columns": [ { diff --git a/tests/zarr/spec/invalid/plate/missing_rows.ome.zarr/zarr.json b/tests/zarr/spec/invalid/plate/missing_rows.ome.zarr/zarr.json index 5fec8166..1913f1e5 100644 --- a/tests/zarr/spec/invalid/plate/missing_rows.ome.zarr/zarr.json +++ b/tests/zarr/spec/invalid/plate/missing_rows.ome.zarr/zarr.json @@ -3,7 +3,7 @@ "node_type": "group", "attributes": { "ome": { - "version": "0.6dev2", + "version": "0.6.dev2", "plate": { "columns": [ { diff --git a/tests/zarr/spec/invalid/plate/missing_well_columnIndex.ome.zarr/zarr.json b/tests/zarr/spec/invalid/plate/missing_well_columnIndex.ome.zarr/zarr.json index c7e7d80f..56c1e029 100644 --- a/tests/zarr/spec/invalid/plate/missing_well_columnIndex.ome.zarr/zarr.json +++ b/tests/zarr/spec/invalid/plate/missing_well_columnIndex.ome.zarr/zarr.json @@ -3,7 +3,7 @@ "node_type": "group", "attributes": { "ome": { - "version": "0.6dev2", + "version": "0.6.dev2", "plate": { "columns": [ { diff --git a/tests/zarr/spec/invalid/plate/missing_well_path.ome.zarr/zarr.json b/tests/zarr/spec/invalid/plate/missing_well_path.ome.zarr/zarr.json index 6e398efa..6767fd58 100644 --- a/tests/zarr/spec/invalid/plate/missing_well_path.ome.zarr/zarr.json +++ b/tests/zarr/spec/invalid/plate/missing_well_path.ome.zarr/zarr.json @@ -3,7 +3,7 @@ "node_type": "group", "attributes": { "ome": { - "version": "0.6dev2", + "version": "0.6.dev2", "plate": { "columns": [ { diff --git a/tests/zarr/spec/invalid/plate/missing_well_rowIndex.ome.zarr/zarr.json b/tests/zarr/spec/invalid/plate/missing_well_rowIndex.ome.zarr/zarr.json index 233bede4..96195382 100644 --- a/tests/zarr/spec/invalid/plate/missing_well_rowIndex.ome.zarr/zarr.json +++ b/tests/zarr/spec/invalid/plate/missing_well_rowIndex.ome.zarr/zarr.json @@ -3,7 +3,7 @@ "node_type": "group", "attributes": { "ome": { - "version": "0.6dev2", + "version": "0.6.dev2", "plate": { "columns": [ { diff --git a/tests/zarr/spec/invalid/plate/missing_wells.ome.zarr/zarr.json b/tests/zarr/spec/invalid/plate/missing_wells.ome.zarr/zarr.json index e1001a5c..87dd5064 100644 --- a/tests/zarr/spec/invalid/plate/missing_wells.ome.zarr/zarr.json +++ b/tests/zarr/spec/invalid/plate/missing_wells.ome.zarr/zarr.json @@ -3,7 +3,7 @@ "node_type": "group", "attributes": { "ome": { - "version": "0.6dev2", + "version": "0.6.dev2", "plate": { "columns": [ { diff --git a/tests/zarr/spec/invalid/plate/negative_acquisition_id.ome.zarr/zarr.json b/tests/zarr/spec/invalid/plate/negative_acquisition_id.ome.zarr/zarr.json index 46569e51..c7ca30a6 100644 --- a/tests/zarr/spec/invalid/plate/negative_acquisition_id.ome.zarr/zarr.json +++ b/tests/zarr/spec/invalid/plate/negative_acquisition_id.ome.zarr/zarr.json @@ -3,7 +3,7 @@ "node_type": "group", "attributes": { "ome": { - "version": "0.6dev2", + "version": "0.6.dev2", "plate": { "acquisitions": [ { diff --git a/tests/zarr/spec/invalid/plate/negative_endtime.ome.zarr/zarr.json b/tests/zarr/spec/invalid/plate/negative_endtime.ome.zarr/zarr.json index 29f42fb0..3da3c8ab 100644 --- a/tests/zarr/spec/invalid/plate/negative_endtime.ome.zarr/zarr.json +++ b/tests/zarr/spec/invalid/plate/negative_endtime.ome.zarr/zarr.json @@ -3,7 +3,7 @@ "node_type": "group", "attributes": { "ome": { - "version": "0.6dev2", + "version": "0.6.dev2", "plate": { "acquisitions": [ { diff --git a/tests/zarr/spec/invalid/plate/non_alphanumeric_column.ome.zarr/zarr.json b/tests/zarr/spec/invalid/plate/non_alphanumeric_column.ome.zarr/zarr.json index b5145814..95b6341c 100644 --- a/tests/zarr/spec/invalid/plate/non_alphanumeric_column.ome.zarr/zarr.json +++ b/tests/zarr/spec/invalid/plate/non_alphanumeric_column.ome.zarr/zarr.json @@ -3,7 +3,7 @@ "node_type": "group", "attributes": { "ome": { - "version": "0.6dev2", + "version": "0.6.dev2", "plate": { "columns": [ { diff --git a/tests/zarr/spec/invalid/plate/non_integer_acquisition_id.ome.zarr/zarr.json b/tests/zarr/spec/invalid/plate/non_integer_acquisition_id.ome.zarr/zarr.json index 4b42b762..ad800b30 100644 --- a/tests/zarr/spec/invalid/plate/non_integer_acquisition_id.ome.zarr/zarr.json +++ b/tests/zarr/spec/invalid/plate/non_integer_acquisition_id.ome.zarr/zarr.json @@ -3,7 +3,7 @@ "node_type": "group", "attributes": { "ome": { - "version": "0.6dev2", + "version": "0.6.dev2", "plate": { "acquisitions": [ { diff --git a/tests/zarr/spec/invalid/plate/non_integer_acquisition_maximumfieldcount.ome.zarr/zarr.json b/tests/zarr/spec/invalid/plate/non_integer_acquisition_maximumfieldcount.ome.zarr/zarr.json index fc359439..f9200d08 100644 --- a/tests/zarr/spec/invalid/plate/non_integer_acquisition_maximumfieldcount.ome.zarr/zarr.json +++ b/tests/zarr/spec/invalid/plate/non_integer_acquisition_maximumfieldcount.ome.zarr/zarr.json @@ -3,7 +3,7 @@ "node_type": "group", "attributes": { "ome": { - "version": "0.6dev2", + "version": "0.6.dev2", "plate": { "acquisitions": [ { diff --git a/tests/zarr/spec/invalid/plate/well_1group.ome.zarr/zarr.json b/tests/zarr/spec/invalid/plate/well_1group.ome.zarr/zarr.json index eeb3f49f..5006e221 100644 --- a/tests/zarr/spec/invalid/plate/well_1group.ome.zarr/zarr.json +++ b/tests/zarr/spec/invalid/plate/well_1group.ome.zarr/zarr.json @@ -3,7 +3,7 @@ "node_type": "group", "attributes": { "ome": { - "version": "0.6dev2", + "version": "0.6.dev2", "plate": { "columns": [ { diff --git a/tests/zarr/spec/invalid/plate/well_3groups.ome.zarr/zarr.json b/tests/zarr/spec/invalid/plate/well_3groups.ome.zarr/zarr.json index 3e9e7071..fda1f9e2 100644 --- a/tests/zarr/spec/invalid/plate/well_3groups.ome.zarr/zarr.json +++ b/tests/zarr/spec/invalid/plate/well_3groups.ome.zarr/zarr.json @@ -3,7 +3,7 @@ "node_type": "group", "attributes": { "ome": { - "version": "0.6dev2", + "version": "0.6.dev2", "plate": { "columns": [ { diff --git a/tests/zarr/spec/invalid/plate/zero_field_count.ome.zarr/zarr.json b/tests/zarr/spec/invalid/plate/zero_field_count.ome.zarr/zarr.json index 1e439042..181bd03c 100644 --- a/tests/zarr/spec/invalid/plate/zero_field_count.ome.zarr/zarr.json +++ b/tests/zarr/spec/invalid/plate/zero_field_count.ome.zarr/zarr.json @@ -3,7 +3,7 @@ "node_type": "group", "attributes": { "ome": { - "version": "0.6dev2", + "version": "0.6.dev2", "plate": { "columns": [ { diff --git a/tests/zarr/spec/valid/image/custom_type_axes.ome.zarr/zarr.json b/tests/zarr/spec/valid/image/custom_type_axes.ome.zarr/zarr.json index 175ff3f9..a3bcc242 100644 --- a/tests/zarr/spec/valid/image/custom_type_axes.ome.zarr/zarr.json +++ b/tests/zarr/spec/valid/image/custom_type_axes.ome.zarr/zarr.json @@ -3,7 +3,7 @@ "node_type": "group", "attributes": { "ome": { - "version": "0.6dev2", + "version": "0.6.dev2", "multiscales": [ { "coordinateSystems": [ diff --git a/tests/zarr/spec/valid/image/invalid_axis_units.ome.zarr/zarr.json b/tests/zarr/spec/valid/image/invalid_axis_units.ome.zarr/zarr.json index 05a870ad..a1844c60 100644 --- a/tests/zarr/spec/valid/image/invalid_axis_units.ome.zarr/zarr.json +++ b/tests/zarr/spec/valid/image/invalid_axis_units.ome.zarr/zarr.json @@ -3,7 +3,7 @@ "node_type": "group", "attributes": { "ome": { - "version": "0.6dev2", + "version": "0.6.dev2", "multiscales": [ { "coordinateSystems": [ diff --git a/tests/zarr/spec/valid/image/mismatch_axes_units.ome.zarr/zarr.json b/tests/zarr/spec/valid/image/mismatch_axes_units.ome.zarr/zarr.json index 7155199f..be93ede7 100644 --- a/tests/zarr/spec/valid/image/mismatch_axes_units.ome.zarr/zarr.json +++ b/tests/zarr/spec/valid/image/mismatch_axes_units.ome.zarr/zarr.json @@ -3,7 +3,7 @@ "node_type": "group", "attributes": { "ome": { - "version": "0.6dev2", + "version": "0.6.dev2", "multiscales": [ { "coordinateSystems": [ diff --git a/tests/zarr/spec/valid/image/missing_name.ome.zarr/zarr.json b/tests/zarr/spec/valid/image/missing_name.ome.zarr/zarr.json index d927ddb3..39213aac 100644 --- a/tests/zarr/spec/valid/image/missing_name.ome.zarr/zarr.json +++ b/tests/zarr/spec/valid/image/missing_name.ome.zarr/zarr.json @@ -3,7 +3,7 @@ "node_type": "group", "attributes": { "ome": { - "version": "0.6dev2", + "version": "0.6.dev2", "multiscales": [ { "datasets": [ diff --git a/tests/zarr/spec/valid/image/untyped_axes.ome.zarr/zarr.json b/tests/zarr/spec/valid/image/untyped_axes.ome.zarr/zarr.json index 8c4378fc..19992184 100644 --- a/tests/zarr/spec/valid/image/untyped_axes.ome.zarr/zarr.json +++ b/tests/zarr/spec/valid/image/untyped_axes.ome.zarr/zarr.json @@ -3,7 +3,7 @@ "node_type": "group", "attributes": { "ome": { - "version": "0.6dev2", + "version": "0.6.dev2", "multiscales": [ { "coordinateSystems": [ diff --git a/tests/zarr/spec/valid/label/minimal.ome.zarr/zarr.json b/tests/zarr/spec/valid/label/minimal.ome.zarr/zarr.json index 1fa6ff3b..350501f1 100644 --- a/tests/zarr/spec/valid/label/minimal.ome.zarr/zarr.json +++ b/tests/zarr/spec/valid/label/minimal.ome.zarr/zarr.json @@ -3,7 +3,7 @@ "node_type": "group", "attributes": { "ome": { - "version": "0.6dev2", + "version": "0.6.dev2", "image-label": { "colors": [ { diff --git a/tests/zarr/spec/valid/label/minimal_properties.ome.zarr/zarr.json b/tests/zarr/spec/valid/label/minimal_properties.ome.zarr/zarr.json index 1c935e07..a811d322 100644 --- a/tests/zarr/spec/valid/label/minimal_properties.ome.zarr/zarr.json +++ b/tests/zarr/spec/valid/label/minimal_properties.ome.zarr/zarr.json @@ -3,7 +3,7 @@ "node_type": "group", "attributes": { "ome": { - "version": "0.6dev2", + "version": "0.6.dev2", "image-label": { "colors": [ { diff --git a/tests/zarr/spec/valid/plate/minimal_acquisitions.ome.zarr/zarr.json b/tests/zarr/spec/valid/plate/minimal_acquisitions.ome.zarr/zarr.json index c6306268..b94bdcbb 100644 --- a/tests/zarr/spec/valid/plate/minimal_acquisitions.ome.zarr/zarr.json +++ b/tests/zarr/spec/valid/plate/minimal_acquisitions.ome.zarr/zarr.json @@ -3,7 +3,7 @@ "node_type": "group", "attributes": { "ome": { - "version": "0.6dev2", + "version": "0.6.dev2", "plate": { "acquisitions": [ { diff --git a/tests/zarr/spec/valid/plate/minimal_no_acquisitions.ome.zarr/zarr.json b/tests/zarr/spec/valid/plate/minimal_no_acquisitions.ome.zarr/zarr.json index 9246b71b..9347dda4 100644 --- a/tests/zarr/spec/valid/plate/minimal_no_acquisitions.ome.zarr/zarr.json +++ b/tests/zarr/spec/valid/plate/minimal_no_acquisitions.ome.zarr/zarr.json @@ -3,7 +3,7 @@ "node_type": "group", "attributes": { "ome": { - "version": "0.6dev2", + "version": "0.6.dev2", "plate": { "columns": [ { diff --git a/tests/zarr/spec/valid/plate/non_alphanumeric_row.ome.zarr/zarr.json b/tests/zarr/spec/valid/plate/non_alphanumeric_row.ome.zarr/zarr.json index cb937658..0b26eefd 100644 --- a/tests/zarr/spec/valid/plate/non_alphanumeric_row.ome.zarr/zarr.json +++ b/tests/zarr/spec/valid/plate/non_alphanumeric_row.ome.zarr/zarr.json @@ -3,7 +3,7 @@ "node_type": "group", "attributes": { "ome": { - "version": "0.6dev2", + "version": "0.6.dev2", "plate": { "columns": [ { diff --git a/tests/zarr/spec/valid/well/minimal_acquisitions.ome.zarr/zarr.json b/tests/zarr/spec/valid/well/minimal_acquisitions.ome.zarr/zarr.json index e0cc9582..e220667d 100644 --- a/tests/zarr/spec/valid/well/minimal_acquisitions.ome.zarr/zarr.json +++ b/tests/zarr/spec/valid/well/minimal_acquisitions.ome.zarr/zarr.json @@ -3,7 +3,7 @@ "node_type": "group", "attributes": { "ome": { - "version": "0.6dev2", + "version": "0.6.dev2", "well": { "images": [ { diff --git a/tests/zarr/spec/valid/well/minimal_no_acquisition.ome.zarr/zarr.json b/tests/zarr/spec/valid/well/minimal_no_acquisition.ome.zarr/zarr.json index f7c3e8b1..6c133f40 100644 --- a/tests/zarr/spec/valid/well/minimal_no_acquisition.ome.zarr/zarr.json +++ b/tests/zarr/spec/valid/well/minimal_no_acquisition.ome.zarr/zarr.json @@ -3,7 +3,7 @@ "node_type": "group", "attributes": { "ome": { - "version": "0.6dev2", + "version": "0.6.dev2", "well": { "images": [ { diff --git a/tests/zarr/strict/invalid/label/no_colors.ome.zarr/zarr.json b/tests/zarr/strict/invalid/label/no_colors.ome.zarr/zarr.json index e1d31448..beebc703 100644 --- a/tests/zarr/strict/invalid/label/no_colors.ome.zarr/zarr.json +++ b/tests/zarr/strict/invalid/label/no_colors.ome.zarr/zarr.json @@ -3,7 +3,7 @@ "node_type": "group", "attributes": { "ome": { - "version": "0.6dev2", + "version": "0.6.dev2", "image-label": {} }, "_conformance": { diff --git a/tests/zarr/strict/invalid/plate/missing_acquisition_maximumfieldcount.ome.zarr/zarr.json b/tests/zarr/strict/invalid/plate/missing_acquisition_maximumfieldcount.ome.zarr/zarr.json index 77f89891..8e56907a 100644 --- a/tests/zarr/strict/invalid/plate/missing_acquisition_maximumfieldcount.ome.zarr/zarr.json +++ b/tests/zarr/strict/invalid/plate/missing_acquisition_maximumfieldcount.ome.zarr/zarr.json @@ -3,7 +3,7 @@ "node_type": "group", "attributes": { "ome": { - "version": "0.6dev2", + "version": "0.6.dev2", "plate": { "acquisitions": [ { diff --git a/tests/zarr/strict/invalid/plate/missing_acquisition_name.ome.zarr/zarr.json b/tests/zarr/strict/invalid/plate/missing_acquisition_name.ome.zarr/zarr.json index 476e5e11..476b89c4 100644 --- a/tests/zarr/strict/invalid/plate/missing_acquisition_name.ome.zarr/zarr.json +++ b/tests/zarr/strict/invalid/plate/missing_acquisition_name.ome.zarr/zarr.json @@ -3,7 +3,7 @@ "node_type": "group", "attributes": { "ome": { - "version": "0.6dev2", + "version": "0.6.dev2", "plate": { "acquisitions": [ { diff --git a/tests/zarr/strict/invalid/plate/missing_name.ome.zarr/zarr.json b/tests/zarr/strict/invalid/plate/missing_name.ome.zarr/zarr.json index 65e485e3..bdd83997 100644 --- a/tests/zarr/strict/invalid/plate/missing_name.ome.zarr/zarr.json +++ b/tests/zarr/strict/invalid/plate/missing_name.ome.zarr/zarr.json @@ -3,7 +3,7 @@ "node_type": "group", "attributes": { "ome": { - "version": "0.6dev2", + "version": "0.6.dev2", "plate": { "columns": [ { diff --git a/tests/zarr/strict/valid/image/image.ome.zarr/zarr.json b/tests/zarr/strict/valid/image/image.ome.zarr/zarr.json index a1b43ea4..9e7434b2 100644 --- a/tests/zarr/strict/valid/image/image.ome.zarr/zarr.json +++ b/tests/zarr/strict/valid/image/image.ome.zarr/zarr.json @@ -3,7 +3,7 @@ "node_type": "group", "attributes": { "ome": { - "version": "0.6dev2", + "version": "0.6.dev2", "multiscales": [ { "coordinateSystems": [ diff --git a/tests/zarr/strict/valid/image/image_metadata.ome.zarr/zarr.json b/tests/zarr/strict/valid/image/image_metadata.ome.zarr/zarr.json index 3727f66a..0f621b9c 100644 --- a/tests/zarr/strict/valid/image/image_metadata.ome.zarr/zarr.json +++ b/tests/zarr/strict/valid/image/image_metadata.ome.zarr/zarr.json @@ -3,7 +3,7 @@ "node_type": "group", "attributes": { "ome": { - "version": "0.6dev2", + "version": "0.6.dev2", "@id": "top", "@type": "ngff:Image", "multiscales": [ diff --git a/tests/zarr/strict/valid/image/image_omero.ome.zarr/zarr.json b/tests/zarr/strict/valid/image/image_omero.ome.zarr/zarr.json index 15d538be..ccc9a24e 100644 --- a/tests/zarr/strict/valid/image/image_omero.ome.zarr/zarr.json +++ b/tests/zarr/strict/valid/image/image_omero.ome.zarr/zarr.json @@ -3,7 +3,7 @@ "node_type": "group", "attributes": { "ome": { - "version": "0.6dev2", + "version": "0.6.dev2", "multiscales": [ { "coordinateSystems": [ @@ -158,7 +158,7 @@ "defaultZ": 2, "model": "color" }, - "version": "0.6dev2" + "version": "0.6.dev2" } }, "_conformance": { diff --git a/tests/zarr/strict/valid/image/multiscales_example.ome.zarr/zarr.json b/tests/zarr/strict/valid/image/multiscales_example.ome.zarr/zarr.json index d8ce15f1..e0ba1ab0 100644 --- a/tests/zarr/strict/valid/image/multiscales_example.ome.zarr/zarr.json +++ b/tests/zarr/strict/valid/image/multiscales_example.ome.zarr/zarr.json @@ -3,7 +3,7 @@ "node_type": "group", "attributes": { "ome": { - "version": "0.6dev2", + "version": "0.6.dev2", "multiscales": [ { "name": "example", diff --git a/tests/zarr/strict/valid/image/multiscales_transformations.ome.zarr/zarr.json b/tests/zarr/strict/valid/image/multiscales_transformations.ome.zarr/zarr.json index 9f1bbf1c..77ca8c20 100644 --- a/tests/zarr/strict/valid/image/multiscales_transformations.ome.zarr/zarr.json +++ b/tests/zarr/strict/valid/image/multiscales_transformations.ome.zarr/zarr.json @@ -3,7 +3,7 @@ "node_type": "group", "attributes": { "ome": { - "version": "0.6dev2", + "version": "0.6.dev2", "multiscales": [ { "coordinateSystems": [ diff --git a/tests/zarr/strict/valid/plate/strict_acquisitions.ome.zarr/zarr.json b/tests/zarr/strict/valid/plate/strict_acquisitions.ome.zarr/zarr.json index 38ab2618..2f758301 100644 --- a/tests/zarr/strict/valid/plate/strict_acquisitions.ome.zarr/zarr.json +++ b/tests/zarr/strict/valid/plate/strict_acquisitions.ome.zarr/zarr.json @@ -3,7 +3,7 @@ "node_type": "group", "attributes": { "ome": { - "version": "0.6dev2", + "version": "0.6.dev2", "plate": { "acquisitions": [ { diff --git a/tests/zarr/strict/valid/plate/strict_no_acquisitions.ome.zarr/zarr.json b/tests/zarr/strict/valid/plate/strict_no_acquisitions.ome.zarr/zarr.json index 23ddc951..7ec27b78 100644 --- a/tests/zarr/strict/valid/plate/strict_no_acquisitions.ome.zarr/zarr.json +++ b/tests/zarr/strict/valid/plate/strict_no_acquisitions.ome.zarr/zarr.json @@ -3,7 +3,7 @@ "node_type": "group", "attributes": { "ome": { - "version": "0.6dev2", + "version": "0.6.dev2", "plate": { "columns": [ { diff --git a/tests/zarr/strict/valid/well/strict_acquisitions.ome.zarr/zarr.json b/tests/zarr/strict/valid/well/strict_acquisitions.ome.zarr/zarr.json index 15994a50..2c7aac66 100644 --- a/tests/zarr/strict/valid/well/strict_acquisitions.ome.zarr/zarr.json +++ b/tests/zarr/strict/valid/well/strict_acquisitions.ome.zarr/zarr.json @@ -3,7 +3,7 @@ "node_type": "group", "attributes": { "ome": { - "version": "0.6dev2", + "version": "0.6.dev2", "well": { "images": [ { diff --git a/tests/zarr/strict/valid/well/strict_no_acquisitions.ome.zarr/zarr.json b/tests/zarr/strict/valid/well/strict_no_acquisitions.ome.zarr/zarr.json index 037fbfb6..af1742ba 100644 --- a/tests/zarr/strict/valid/well/strict_no_acquisitions.ome.zarr/zarr.json +++ b/tests/zarr/strict/valid/well/strict_no_acquisitions.ome.zarr/zarr.json @@ -3,7 +3,7 @@ "node_type": "group", "attributes": { "ome": { - "version": "0.6dev2", + "version": "0.6.dev2", "well": { "images": [ {