|
1 | | -# tp53 |
| 1 | +# tp53 & seshat |
2 | 2 |
|
3 | | -<!-- [](http://bioconda.github.io/recipes/seshat/README.html) --> |
4 | | -<!-- [](http://bioconda.github.io/recipes/seshat/README.html) --> |
| 3 | +[](http://bioconda.github.io/recipes/seshat/README.html) |
| 4 | +[](http://bioconda.github.io/recipes/seshat/README.html) |
5 | 5 | [](https://www.scala-lang.org/) |
6 | 6 | [](https://github.com/AdoptOpenJDK/homebrew-openjdk) |
7 | 7 | [](https://github.com/clintval/typeline) |
@@ -57,6 +57,8 @@ For round-trip Seshat annotation of a VCF file, execute a command like: |
57 | 57 | 15:23:56 INFO SeshatMerge - Successfully annotated variant calls. |
58 | 58 | ``` |
59 | 59 |
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| 60 | +See [Upload a VCF to Seshat](#upload-a-vcf-to-seshat) and [Download a Seshat Annotation from Gmail](#download-a-seshat-annotation-from-gmail) for pre-requisite setup. |
| 61 | + |
60 | 62 | ## Upload a VCF to Seshat |
61 | 63 |
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62 | 64 | Upload a VCF to the Seshat annotation webserver using a headless browser. |
@@ -164,7 +166,7 @@ The following rules are used to find annotation files: |
164 | 166 |
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165 | 167 | ###### Gmail Authentication |
166 | 168 |
|
167 | | -After installing all Python dependencies, you must create a Google developer's OAuth file. |
| 169 | +You must create a Google developer's OAuth file. |
168 | 170 | First-time 2FA may be required depending on the configuration of your Gmail service. |
169 | 171 | If 2FA is required, then this script will block until you acknowledge your 2FA prompt. |
170 | 172 | A 2FA prompt is often delivered through an auto-opening web browser. |
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