66[ ![ Java Version] ( https://img.shields.io/badge/java-11,17,21-c22d40.svg )] ( https://github.com/AdoptOpenJDK/homebrew-openjdk )
77[ ![ Python Versions] ( https://img.shields.io/badge/python-3.11_|_3.12_|_3.13-blue )] ( https://github.com/clintval/typeline )
88
9- Tools for programmatically annotating VCFs with the Seshat TP53 database.
9+ Tools for programmatically annotating VCFs with the [ Seshat TP53 database] ( http://vps338341.ovh.net/ ) .
1010
1111![ Mount Shuksan] ( .github/img/cover.jpg )
1212
@@ -20,7 +20,7 @@ Install with the Conda or Mamba package manager after setting your [Bioconda cha
2020
2121## Quick Usage Example
2222
23- For a round-trip annotation of a VCF file, execute a command like:
23+ For round-trip Seshat annotation of a VCF file, execute a command like:
2424
2525``` bash
2626❯ seshat round-trip \
@@ -59,7 +59,7 @@ For a round-trip annotation of a VCF file, execute a command like:
5959
6060## Upload a VCF to Seshat
6161
62- Upload a VCF to the [ Seshat TP53 annotation server ] ( http://vps338341.ovh.net/ ) using a headless browser.
62+ Upload a VCF to the Seshat annotation webserver using a headless browser.
6363
6464``` bash
6565❯ seshat upload-vcf \
@@ -109,7 +109,7 @@ Distributions of MacOS may require you to authenticate the Chrome driver ([link]
109109
110110## Download a Seshat Annotation from Gmail
111111
112- Download [ Seshat] ( http://vps338341.ovh.net/ ) VCF annotations by awaiting a server-generated email.
112+ Download Seshat VCF annotations by awaiting a server-generated email.
113113
114114``` bash
115115❯ seshat find-in-gmail \
@@ -213,7 +213,7 @@ If Seshat fails to annotate the VCF file but still emails the user a response, t
213213
214214## Merge Annotations into a VCF
215215
216- Merge annotations into the ` INFO ` fields of the VCF.
216+ Merge Seshat annotations into the ` INFO ` fields of the VCF.
217217
218218``` bash
219219❯ seshat merge \
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