Fine tuning documentation changes.

Author: cnobles

docs/conf.py

@@ -20,7 +20,7 @@
 # -- Project information -----------------------------------------------------
 
 project = 'iGUIDE'
-copyright = '2024, Christopher Nobles, Ph.D.'
+copyright = '2024, Christopher Nobles, Ph.D'
 author = 'Christopher Nobles, Ph.D.'
 
 # The short X.Y version

docs/usage.rst

@@ -443,18 +443,18 @@ Manual Install
 Skip to installing iGUIDE if you already have miniconda or anaconda installed. 
 These can be executed in your home directory.
 
-Get the latest version of miniconda install script.::
+Get the latest version of miniconda install script::
 
   __conda_url=https://repo.continuum.io/miniconda/Miniconda3-latest-Linux-x86_64.sh
   wget -q ${__conda_url} -O miniconda.sh
 
 Installing miniconda through downloaded script. You can choose a different path 
-for the install, here it is installed into the home directory.::
+for the install, here it is installed into the home directory::
 
   __conda_path="~/miniconda3"
   bash miniconda.sh -b -p ${__conda_path}
 
-Source conda to activate the installation for use.::
+Source conda to activate the installation for use::
   
   source ${__conda_path}/etc/profile.d/conda.sh
 
@@ -464,20 +464,20 @@ The following commands should be called from within the iGUIDE directory
 
 Install the conda environment from the requirements file. The name field here 
 can be changed to what you would like to call the environment, default for the 
-install script is 'iguide'.::
+install script is 'iguide'::
 
   conda create --name=iguide --quiet --yes --file etc/build.b1.0.1.txt
 
 After successful creation of the environment, activate the iguide environment (or what 
-you've named it).::
+you've named it)::
 
   conda activate iguide
 
-Install the supporting R-package into the environment.::
+Install the supporting R-package into the environment::
 
   R CMD INSTALL tools/iguideSupport 
 
-Setup your environmental variables.::
+Setup your environmental variables::
 
   __iguide_dir=$(pwd)
 
@@ -490,38 +490,38 @@ Setup your environmental variables.::
       ${CONDA_PREFIX}/etc/conda/deactivate.d/env_vars.sh
 
 You should now deactivate and reactivate the environment to initiate the environmental 
-variables.::
+variables::
 
   conda deactivate
   conda activate iguide
 
-Lastely, install the command line interface for iGUIDE using pip.::
+Lastely, install the command line interface for iGUIDE using `pip`::
   
   pip install --upgrade tools/iguidelib/
 
 **Testing**
 Test to make sure the components were installed correctly.
 
-Test for required R-packages installed.::
+Test for required R-packages installed::
 
   $(Rscript tools/rscripts/check_for_required_packages.R &> /dev/null) && echo true || echo false
 
-Check to make sure iguideSupport was installed correctly.::
+Check to make sure iguideSupport was installed correctly::
 
   $(Rscript tools/rscripts/check_pkgs.R iguideSupport &> /dev/null) && echo true || echo false
 
-Run unit tests for iguideSupport.::
+Run unit tests for iguideSupport::
 
   `$(Rscript tools/rscripts/check_iguideSupport.R &> /dev/null) && echo true || echo false'
 
-Check to make sure the pip install of the CLI was successful.::
+Check to make sure the pip install of the CLI was successful::
 
   command -v iguide &> /dev/null && echo true || echo false
 
 Run tests for iGUIDE, this step will take a little bit to complete if it starts processing 
 the test case. Go grab a coffee, you deserve it getting to this point. :) The test will 
 activate the environment as part of the test, so you should deactivate your environment 
-first and then initiate the test.::
+first and then initiate the test::
 
   conda deactivate
   bash etc/tests/test.sh iguide