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mr-cmr-c
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add cwl-runner header to all CWL test files, mark them executable
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+36
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‎testdata/cond-single-source-wf-003.1.cwl

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#!/usr/bin/env cwl-runner
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class: Workflow
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cwlVersion: v1.2
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inputs:

‎testdata/cond-single-source-wf-004.1.cwl

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#!/usr/bin/env cwl-runner
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class: Workflow
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cwlVersion: v1.2
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inputs:
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pickValue: the_only_non_null
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requirements:
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InlineJavascriptRequirement: {}
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InlineJavascriptRequirement: {}

‎testdata/cond-single-source-wf-005.1.cwl

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#!/usr/bin/env cwl-runner
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class: Workflow
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cwlVersion: v1.2
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inputs:
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pickValue: all_non_null
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requirements:
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InlineJavascriptRequirement: {}
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InlineJavascriptRequirement: {}

‎testdata/cond-wf-003.1.cwl

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#!/usr/bin/env cwl-runner
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class: Workflow
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cwlVersion: v1.2
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inputs:

‎testdata/cond-wf-004.1.cwl

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#!/usr/bin/env cwl-runner
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class: Workflow
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cwlVersion: v1.2
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inputs:
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requirements:
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InlineJavascriptRequirement: {}
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MultipleInputFeatureRequirement: {}
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MultipleInputFeatureRequirement: {}

‎testdata/cond-wf-005.1.cwl

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#!/usr/bin/env cwl-runner
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class: Workflow
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cwlVersion: v1.2
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inputs:
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requirements:
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InlineJavascriptRequirement: {}
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MultipleInputFeatureRequirement: {}
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MultipleInputFeatureRequirement: {}

‎testdata/count-lines6-single-source-wf_v1_0.cwl

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‎testdata/count-lines6-single-source-wf_v1_1.cwl

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‎testdata/count-lines6-single-source-wf_v1_2.cwl

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‎testdata/count-lines6-wf_v1_0.cwl

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‎testdata/count-lines6-wf_v1_1.cwl

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‎testdata/count-lines6-wf_v1_2.cwl

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‎testdata/count-lines7-single-source-wf_v1_0.cwl

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‎testdata/count-lines7-single-source-wf_v1_1.cwl

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‎testdata/count-lines7-single-source-wf_v1_2.cwl

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‎testdata/count-lines7-wf_v1_0.cwl

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‎testdata/count-lines7-wf_v1_1.cwl

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‎testdata/count-lines7-wf_v1_2.cwl

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‎testdata/dockstore-tool-md5sum.cwl

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‎testdata/dockstore-tool-md5sum_v11.cwl

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‎testdata/dockstore-tool-md5sum_v12.cwl

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‎testdata/echo-tool-packed.cwl

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#!/usr/bin/env cwl-runner
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cwlVersion: v1.2
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$graph:
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- class: CommandLineTool

‎testdata/foo-array.cwl

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#!/usr/bin/env cwl-runner
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class: CommandLineTool
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cwlVersion: v1.2
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inputs:

‎testdata/foo.cwl

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#!/usr/bin/env cwl-runner
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class: CommandLineTool
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cwlVersion: v1.2
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inputs:

‎testdata/formattest2.cwl

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#!/usr/bin/env cwl-runner
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$namespaces:
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edam: http://edamontology.org/
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$schemas:

‎testdata/formattest2_v1_0.cwl

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#!/usr/bin/env cwl-runner
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$namespaces:
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edam: http://edamontology.org/
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$schemas:

‎testdata/formattest2_v1_1.cwl

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#!/usr/bin/env cwl-runner
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$namespaces:
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edam: http://edamontology.org/
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$schemas:

‎testdata/js-expr-req-wf.cwl

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#!/usr/bin/env cwl-runner
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cwlVersion: v1.2
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$graph:
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- id: tool
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tool:
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run: "#tool"
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in: {}
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out: [out]
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out: [out]

‎testdata/md5sum.cwl

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#!/usr/bin/env cwl-runner
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cwlVersion: v1.0
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class: Workflow
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‎testdata/md5sum_v11.cwl

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#!/usr/bin/env cwl-runner
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cwlVersion: v1.1
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class: Workflow
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‎testdata/md5sum_v12.cwl

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#!/usr/bin/env cwl-runner
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cwlVersion: v1.2
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class: Workflow
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‎testdata/record-output-wf_v1_0.cwl

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‎testdata/record-output-wf_v1_1.cwl

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‎testdata/record-output-wf_v1_2.cwl

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‎testdata/record-output_v1_0.cwl

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#!/usr/bin/env cwl-runner
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class: CommandLineTool
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cwlVersion: v1.0
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hints:
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- {valueFrom: "> foo", position: 3, shellQuote: false}
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- {valueFrom: "&&", position: 4, shellQuote: false}
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- {valueFrom: "cat", position: 5}
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- {valueFrom: "> bar", position: 7, shellQuote: false}
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- {valueFrom: "> bar", position: 7, shellQuote: false}

‎testdata/record-output_v1_1.cwl

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#!/usr/bin/env cwl-runner
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class: CommandLineTool
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cwlVersion: v1.1
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requirements:
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- {valueFrom: "> foo", position: 3, shellQuote: false}
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- {valueFrom: "&&", position: 4, shellQuote: false}
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- {valueFrom: "cat", position: 5}
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- {valueFrom: "> bar", position: 7, shellQuote: false}
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- {valueFrom: "> bar", position: 7, shellQuote: false}

‎testdata/record-output_v1_2.cwl

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#!/usr/bin/env cwl-runner
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class: CommandLineTool
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cwlVersion: v1.2
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requirements:
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- {valueFrom: "> foo", position: 3, shellQuote: false}
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- {valueFrom: "&&", position: 4, shellQuote: false}
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- {valueFrom: "cat", position: 5}
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- {valueFrom: "> bar", position: 7, shellQuote: false}
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- {valueFrom: "> bar", position: 7, shellQuote: false}

‎testdata/remote-cwl/tool1.cwl

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#!/usr/bin/env cwl-runner
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# We have this tool to test both local and remote packing
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class: CommandLineTool

‎testdata/remote-cwl/tool2.cwl

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#!/usr/bin/env cwl-runner
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# We have this tool to test both local and remote packing
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class: CommandLineTool

‎testdata/remote-cwl/wf1.cwl

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#!/usr/bin/env cwl-runner
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class: Workflow
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cwlVersion: v1.0
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inputs:
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requirements:
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SchemaDefRequirement:
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types:
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- $import: ../types/testtypes.yml
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- $import: ../types/testtypes.yml

‎testdata/revsort-run-1-packed.cwl

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#!/usr/bin/env cwl-runner
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{
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"$graph": [
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{
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"file:///home/stain/src/cwltool/tests/wf/empty.ttl",
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"file:///home/stain/src/cwltool/tests/wf/empty2.ttl"
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]
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}
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}

‎testdata/scatter-wf1_v1_0.cwl

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‎testdata/scatter-wf1_v1_1.cwl

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‎testdata/scatter-wf1_v1_2.cwl

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‎testdata/scatter-wf2_v1_0.cwl

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‎testdata/scatter-wf2_v1_1.cwl

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‎testdata/scatter-wf2_v1_2.cwl

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‎testdata/scatter-wf3_v1_0.cwl

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‎testdata/scatter-wf3_v1_1.cwl

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‎testdata/scatter-wf3_v1_2.cwl

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‎testdata/step-valuefrom2-wf_v1_0.cwl

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‎testdata/step-valuefrom2-wf_v1_1.cwl

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‎testdata/step-valuefrom2-wf_v1_2.cwl

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‎testdata/step-valuefrom3-wf_v1_0.cwl

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‎testdata/step-valuefrom3-wf_v1_1.cwl

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‎testdata/step-valuefrom3-wf_v1_2.cwl

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‎testdata/step_valuefrom5_wf_v1_0.cwl

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‎testdata/step_valuefrom5_wf_v1_1.cwl

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‎testdata/step_valuefrom5_wf_v1_2.cwl

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‎testdata/step_valuefrom5_wf_with_id_v1_0.cwl

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‎testdata/step_valuefrom5_wf_with_id_v1_1.cwl

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‎testdata/step_valuefrom5_wf_with_id_v1_2.cwl

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‎testdata/wc3-tool_v1_0.cwl

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‎testdata/wc3-tool_v1_1.cwl

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‎testdata/wc3-tool_v1_2.cwl

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‎testdata/wf2.cwl

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#!/usr/bin/env cwl-runner
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class: Workflow
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cwlVersion: v1.0
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inputs:
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requirements:
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SchemaDefRequirement:
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types:
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- $import: types/testtypes.yml
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- $import: types/testtypes.yml

‎testdata/workflow_input_format_expr.cwl

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‎testdata/workflow_input_format_expr_v1_1.cwl

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‎testdata/workflow_input_format_expr_v1_2.cwl

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‎testdata/workflow_input_sf_expr.cwl

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‎testdata/workflow_input_sf_expr_array.cwl

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‎testdata/workflow_input_sf_expr_array_v1_1.cwl

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‎testdata/workflow_input_sf_expr_array_v1_2.cwl

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‎testdata/workflow_input_sf_expr_v1_1.cwl

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‎testdata/workflow_input_sf_expr_v1_2.cwl

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‎testdata/workflows/count-lines16-wf.cwl

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‎testdata/workflows/import-in-type.cwl

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‎testdata/workflows/scatter-wf4.cwl

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‎testdata/workflows/wf5.cwl

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#!/usr/bin/env cwl-runner
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# Checks symbolic links on github
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class: Workflow

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