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Fix: Honor EnvVarRequirement on workflow steps with --preserve-entire… #3035

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Fix: Honor EnvVarRequirement on workflow steps with --preserve-entire…

Fix: Honor EnvVarRequirement on workflow steps with --preserve-entire… #3035

Re-run triggered June 12, 2026 13:25
@mr-cmr-c
#2286
mmancini-skao:fix_step_env_override_ignored
Status Failure
Total duration 11m 55s
Artifacts 11

ci-tests.yml

on: pull_request
No leftovers
3m 45s
No leftovers
cwltool release test
5m 31s
cwltool release test
build_test_container
11m 47s
build_test_container
Test on macos-latest
2m 48s
Test on macos-latest
Matrix: CWL conformance
Matrix: Linters
Matrix: Tox
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Annotations

39 errors
Tox (3, 11, lint)
Process completed with exit code 2.
Tox (3, 10, unit)
The strategy configuration was canceled because "tox._3_11_lint" failed
Tox (3, 10, lint)
The strategy configuration was canceled because "tox._3_11_lint" failed
Tox (3, 10, bandit)
The strategy configuration was canceled because "tox._3_11_lint" failed
Tox (3, 11, bandit)
The strategy configuration was canceled because "tox._3_11_lint" failed
Tox (3, 11, mypy)
The strategy configuration was canceled because "tox._3_11_lint" failed
Tox (3, 10, mypy)
The strategy configuration was canceled because "tox._3_11_lint" failed
Tox (3, 12, lint)
The strategy configuration was canceled because "tox._3_11_lint" failed
Tox (3, 13, lint)
The strategy configuration was canceled because "tox._3_11_lint" failed
Tox (3, 13, unit)
The strategy configuration was canceled because "tox._3_11_lint" failed
Tox (3, 12, mypy)
The strategy configuration was canceled because "tox._3_11_lint" failed
Tox (3, 12, mypy)
The operation was canceled.
Tox (3, 11, unit)
The strategy configuration was canceled because "tox._3_11_lint" failed
Tox (3, 11, unit)
The operation was canceled.
Tox (3, 12, unit)
The strategy configuration was canceled because "tox._3_11_lint" failed
Tox (3, 12, unit)
The operation was canceled.
Tox (3, 14, unit)
The strategy configuration was canceled because "tox._3_11_lint" failed
Tox (3, 14, unit)
The operation was canceled.
Tox (3, 14, lint)
The strategy configuration was canceled because "tox._3_11_lint" failed
Tox (3, 14, lint)
The operation was canceled.
Tox (3, 13, mypy)
The strategy configuration was canceled because "tox._3_11_lint" failed
Tox (3, 13, mypy)
The operation was canceled.
Tox (3, 14, mypy)
The strategy configuration was canceled because "tox._3_11_lint" failed
Tox (3, 14, mypy)
The operation was canceled.
Test on macos-latest
Process completed with exit code 2.
No leftovers
Process completed with exit code 2.
cwltool release test
Process completed with exit code 2.
CWL conformance (v1.0, singularity)
Process completed with exit code 1.
CWL conformance (v1.0, docker)
Process completed with exit code 1.
CWL conformance (v1.0, podman)
Process completed with exit code 1.
CWL conformance (v1.3.0-dev1, --relax-path-checks)
Process completed with exit code 1.
CWL conformance (v1.1, singularity)
Process completed with exit code 1.
CWL conformance (v1.1, podman)
Process completed with exit code 1.
CWL conformance (v1.1, docker)
Process completed with exit code 1.
CWL conformance (v1.2, podman)
Process completed with exit code 1.
CWL conformance (v1.2, docker)
Process completed with exit code 1.
CWL conformance (v1.2, docker, --fast-parser)
Process completed with exit code 1.
CWL conformance (v1.2, singularity)
Process completed with exit code 1.
build_test_container
Process completed with exit code 1.

Artifacts

Produced during runtime
Name Size Digest
cwl-v1.0-docker-conformance-results
2.98 KB
sha256:b59db2168e08379c4204037e85b06543d163d028387183a487afcf7c9fb7c1de
cwl-v1.0-podman-conformance-results
2.98 KB
sha256:119e529153aab5b9fb9e86f843ad6a478529f7e7a810420a5e39c5a26e6082ef
cwl-v1.0-singularity-conformance-results
2.99 KB
sha256:47d7f695cabca5c96c4e1cb78a930982c889ebbce71c34a71665a092112f9085
cwl-v1.1-docker-conformance-results
3.7 KB
sha256:8156ec8d763eb7ff94f3d053aacd3824dbbd2dda82c181764f17b52e0044efc3
cwl-v1.1-podman-conformance-results
3.72 KB
sha256:493a57ca103dde89c65cb3470f728207e82f132a979aaf693b3f1aefd2535596
cwl-v1.1-singularity-conformance-results
3.73 KB
sha256:6ae9493c8cef0c002ef388c3c38ea8633257a6dbb38c42bfd5257623a63cda2a
cwl-v1.2-docker--fast-parser-conformance-results
5.17 KB
sha256:2ef6e8a9f2bd401b1ca445769b59bf193bbbf8abe1693de15bb807503596b5e7
cwl-v1.2-docker-conformance-results
5.2 KB
sha256:2471311c9acbee923532f93749885ab536d1d28596769916e5a98271a18184fb
cwl-v1.2-podman-conformance-results
5.17 KB
sha256:4549e634bdcf6956a6d8a01f0726908d672e5eb1466ec536b1744301b0171b40
cwl-v1.2-singularity-conformance-results
5.21 KB
sha256:331bd491a474061410b87ad86987f76c749497920c96adaf3e354776bfcbdd1f
cwl-v1.3.0-dev1---relax-path-checks-conformance-results
5.54 KB
sha256:7d9f3d68df2a4c714fe1b1d647a3e2a2a6c21a396270a7e925a6a03f5c603e35