[update] v0.0.45-50

[patrick-ogrady]

Related: commonwarexyz/monorepo#802
Related: commonwarexyz/monorepo#807
Related: commonwarexyz/monorepo#806

Resolves: #81
Resolves: #78
Resolves: #75
Resolves: #94
Resolves: #95
Resolves: #37

Future Work: #99
Future Work: #100
Future Work: #101

TODO

• wrap channels with codec
• remove wrapped archive
• switch to 1 cap for pruned archives (verify we are properly pruning map)
• Ignore pruned errors when adding to archives
• Use variant for block types
• Integrate: [runtime] Expand Logger Functionality monorepo#881
• Configure metrics ports on local mode (revert config to u16 rather than Option)
• Ensure we are actually pruning
• Fix index bug: [storage/index] Panic on None monorepo#886
• Revert to TwoCap

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[Copilot]

Pull Request Overview

This PR updates various modules to integrate new library versions (v0.0.47) and API changes. Key changes include:

• Replacing calls to legacy deserialization with the new decode functions across modules.
• Renaming endpoint and function names (for example, notarization_get → notarized_get) to match updated APIs.
• Removing obsolete modules (archive and buffer) and updating internal messaging and proof verification logic.

Reviewed Changes

Copilot reviewed 29 out of 29 changed files in this pull request and generated no comments.

Show a summary per file

File	Description
inspector/src/utils.rs	Updated digest decoding and view extraction using new APIs.
inspector/src/main.rs	Adjusted identity decoding and renamed query functions.
client/src/lib.rs & client/src/consensus.rs	Updated error handling and API calls to use decode() consistently.
chain/src/lib.rs, chain/src/engine.rs, etc.	Upgraded internal modules with new parameters (e.g. deque_size) and updated test harness using Runner.
chain/src/actors/syncer/*	Removed legacy modules and adjusted message enum naming.
chain/src/actors/application/*	Removed unused proof verifier field and refactored message handling.
Cargo.toml workspaces	Updated dependency versions to v0.0.47 and removed unused deps.

Comments suppressed due to low confidence (3)

chain/src/actors/syncer/archive.rs:1

• The archive module was completely removed. Please confirm that this removal is intended and that no other parts of the codebase depend on its functionality.

Entire file removal

chain/src/actors/syncer/buffer.rs:1

• The buffer module has been entirely removed. Verify that any references to this module are updated and that its removal will not break dependent functionality.

Entire file removal

chain/src/actors/application/actor.rs:55

• The prover field has been removed from the Actor struct. Please ensure that all essential proof verification logic is now correctly handled elsewhere.

pub struct Actor<R: Rng + Spawner + Metrics + Clock> { … }

[patrick-ogrady]

This is where we would track other activity types if we found them interesting.

[patrick-ogrady]

Looks like there is a bug in the index changes we made:

Program terminated with signal SIGSEGV, Segmentation fault.
#0  0x0000c0c94e3f5bb0 in core::ptr::drop_in_place<alloc::boxed::Box<commonware_storage::index::storage::Record<u64>>> ()
[Current thread is 1 (Thread 0xfd436476ee40 (LWP 4177))]

[codecov-commenter]

Codecov Report

❌ Patch coverage is 49.05838% with 541 lines in your changes missing coverage. Please review.
✅ Project coverage is 52.79%. Comparing base (96a2fae) to head (5516283).
⚠️ Report is 32 commits behind head on main.

Files with missing lines	Patch %	Lines
chain/src/bin/setup.rs	0.00%	225 Missing ⚠️
chain/src/bin/validator.rs	0.00%	115 Missing ⚠️
client/src/consensus.rs	0.00%	76 Missing ⚠️
types/src/wasm.rs	0.00%	63 Missing ⚠️
chain/src/actors/syncer/actor.rs	90.59%	19 Missing ⚠️
types/src/lib.rs	86.07%	11 Missing ⚠️
types/src/block.rs	86.20%	8 Missing ⚠️
chain/src/actors/syncer/key.rs	61.11%	7 Missing ⚠️
chain/src/lib.rs	94.89%	7 Missing ⚠️
inspector/src/main.rs	0.00%	6 Missing ⚠️
... and 1 more

@@            Coverage Diff             @@
##             main      #96      +/-   ##
==========================================
- Coverage   57.64%   52.79%   -4.86%     
==========================================
  Files          23       21       -2     
  Lines        3563     3349     -214     
==========================================
- Hits         2054     1768     -286     
- Misses       1509     1581      +72     

Files with missing lines	Coverage Δ
chain/src/actors/application/actor.rs	90.47% <ø> (-0.56%)	⬇️
chain/src/actors/application/ingress.rs	100.00% <ø> (ø)
chain/src/actors/application/supervisor.rs	94.59% <100.00%> (-0.53%)	⬇️
chain/src/actors/syncer/ingress.rs	100.00% <100.00%> (ø)
chain/src/engine.rs	97.97% <100.00%> (+1.04%)	⬆️
client/src/lib.rs	0.00% <ø> (ø)
types/src/consensus.rs	100.00% <100.00%> (+10.10%)	⬆️
inspector/src/utils.rs	0.00% <0.00%> (ø)
inspector/src/main.rs	0.00% <0.00%> (ø)
chain/src/actors/syncer/key.rs	76.78% <61.11%> (+16.78%)	⬆️
... and 8 more

... and 1 file with indirect coverage changes

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