Rebuild more updates

Author: anwai98

micro_sam.html

@@ -302,7 +302,7 @@ <h2 id="trackastra-installation">Trackastra installation</h2>
 
 <h2 id="from-installer">From installer</h2>
 
-<p><strong>Note: The installers are not yet up-to-date with the latest version of microsam (v1.4.0). We will update them in the next few days.</strong></p>
+<p><strong>Note: The installers are not yet up-to-date with the latest version of micro-sam (v1.4.0 onwards). We will update them in the next few weeks.</strong></p>
 
 <p>We also provide installers for Linux and Windows:</p>
 
@@ -525,7 +525,7 @@ <h2 id="object-classification">Object Classification</h2>
 <li>calling <code><a href="micro_sam/sam_annotator/object_classifier.html#object_classifier">micro_sam.sam_annotator.object_classifier.object_classifier</a></code> in a python script.</li>
 </ul>
 
-<p>When starting this worklfow the following interface opens up.</p>
+<p>When starting this workflow the following interface opens up.</p>
 
 <p><img src="https://raw.githubusercontent.com/computational-cell-analytics/micro-sam/master/doc/images/object-classifier.png" width="512"></p>
 
@@ -535,7 +535,7 @@ <h2 id="object-classification">Object Classification</h2>
 By clicking <code>Train and predict</code> you train a random forest classifer on the objects you have annotated, that uses the image embeddings projected to the objects as features.
 It is then applied to all objects to obtain the semantic segmentation shown in <code>prediction</code>.</p>
 
-<p><strong>This worklfow is still experimental. It may significantly change in the future and we are working on a publication to explain the underlying methodology and to document it properly. Feedback is already welcome in case you use it.</strong></p>
+<p><strong>This workflow is still experimental. It may significantly change in the future and we are working on a publication to explain the underlying methodology and to document it properly. Feedback is already welcome in case you use it.</strong></p>
 
 <h2 id="finetuning-ui">Finetuning UI</h2>
 
@@ -875,7 +875,7 @@ <h1 id="community-data-submissions">Community Data Submissions</h1>
 <ul>
 <li>Use a title "Data submission for micro_sam: ..." ("..." should be a title for your data, e.g. "cells in brightfield microscopy")
 <ul>
-<li>On image.sc use the tag <code>micro-sam</code>.</li>
+<li>On <a href="https://forum.image.sc/">image.sc</a> use the tag <code>micro-sam</code>.</li>
 </ul></li>
 <li>Briefly describe your data and add an image that shows the microscopy data and the segmentation masks you have.</li>
 <li>Make sure to describe:
@@ -1457,23 +1457,23 @@ <h2 id="start-band">Start BAND</h2>
 <li>Go to the desktop by clicking <strong>GO TO DESKTOP</strong> in the <strong>Running Desktops</strong> menu. See also the screenshot below.</li>
 </ul>
 
-<p><img src="https://github.com/user-attachments/assets/2e615769-b176-4ced-9507-99553aafb1c1" alt="image" /></p>
+<p><img src="https://github.com/user-attachments/assets/2e615769-b176-4ced-9507-99553aafb1c1" width="1000"/></p>
 
 <h2 id="start-micro_sam-in-band">Start <code><a href="">micro_sam</a></code> in BAND</h2>
 
 <ul>
 <li><p>Select <strong>Applications -> Image Analysis -> microSAM</strong> (see screenshot)
 <img src="https://github.com/user-attachments/assets/f1e7af0d-5cc6-442d-95c7-9010f5996e2a" alt="image" /></p></li>
 <li><p>This will open the napari GUI, where you can select the images and annotator tools you want to use (see screenshot). NOTE: this may take a few minutes.
-<img src="https://github.com/user-attachments/assets/23296589-be8d-4f9f-9a38-92d5eea60541" alt="image" /></p></li>
+<img src="https://github.com/user-attachments/assets/23296589-be8d-4f9f-9a38-92d5eea60541" width="1000"/></p></li>
 <li><p>For testing if the tool works, it's best to use the <strong>Annotator 2d</strong> first.</p>
 
 <ul>
 <li>You can find an example image to use by selection <code>File</code> -> <code>Open Sample</code> -> <code>Segment Anything for Microscopy</code> -> <code>HeLa 2d example data</code> (see screenshot)
-<img src="https://github.com/user-attachments/assets/ac259787-6238-4b68-8739-48a62f169913" alt="image" /></li>
+<img src="https://github.com/user-attachments/assets/ac259787-6238-4b68-8739-48a62f169913" width="1000"/></li>
 </ul></li>
 <li>Then select <code>Plugins</code> -> <code>Segment Anything for Microscopy</code> -> <code>Annotator 2d</code>, and the tool will start.
-<img src="https://github.com/user-attachments/assets/3062e723-6fe0-48f7-835f-663be7d78b87" alt="image" /></li>
+<img src="https://github.com/user-attachments/assets/3062e723-6fe0-48f7-835f-663be7d78b87" width="1000"/></li>
 </ul>
 
 <h2 id="transfering-data-to-band">Transfering data to BAND</h2>