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micro_sam.html

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@@ -715,8 +715,9 @@ <h1 id="finetuned-models">Finetuned Models</h1>
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They are available in the <a href="https://bioimage.io/#/">BioImage.IO Model Zoo</a> and are also hosted on Zenodo.</p>
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<p>In the <a href="#annotation-tools">annotation tools</a>, you can select the model from the top widget:
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<img src="https://raw.githubusercontent.com/computational-cell-analytics/micro-sam/master/doc/images/model-selection.png" width="512">
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You can use the <code>Model</code> dropdown (left side) to select which kind of model to use and the <code>model size</code> dropdown (right side, available after opening the <code>Embedding Settings</code> menu) to select the size of the model.
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<img src="https://raw.githubusercontent.com/computational-cell-analytics/micro-sam/master/doc/images/model-selector.png" width="512"></p>
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<p>You can use the <code>Model</code> dropdown (left side) to select which kind of model to use and the <code>model size</code> dropdown (right side, available after opening the <code>Embedding Settings</code> menu) to select the size of the model.
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By default, the <code>base</code> size is used.</p>
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<p>If you are using the <a href="#using-the-command-line-interface-cli">CLI</a> or the <a href="#using-the-python-library">python library</a>, then you can specify the model to use via the <code>model_type</code> parameter, which consists of a single name composed of model type and size. See for example the <a href="https://github.com/computational-cell-analytics/micro-sam/blob/master/examples/annotator_2d.py#L62">2d annotator example</a>.</p>
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<p><img src="https://raw.githubusercontent.com/computational-cell-analytics/micro-sam/master/doc/images/em_comparison.png" width="768"></p>
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<p>Note: if you have a <code><a href="">micro_sam</a></code> version older than v1.4.0, then the model selection dialogue in the <a href="#annotation-tools">annotation tools</a> looks differently. In these versions, you have to select the model by its full name:
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<img src="https://raw.githubusercontent.com/computational-cell-analytics/micro-sam/master/doc/images/model-type-selector.png" width="256"></p>
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<img src="https://raw.githubusercontent.com/computational-cell-analytics/micro-sam/master/doc/images/model-type-selector-old.png" width="384"></p>
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<h2 id="choosing-a-model">Choosing a Model</h2>
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