openssl incorrectly linked in environment

[h-vetinari]

I installed openssl 1.1.1f into a new environment (full conda list below the fold), but the commandline picks up the openssl from somewhere else (not even the base environment, where I still have 1.1.1d).

(builder) D:\Dev\conda-forge>openssl version
OpenSSL 1.1.1e  17 Mar 2020

(builder) D:\Dev\conda-forge>which openssl
/usr/bin/openssl

(builder) D:\Dev\conda-forge>echo %PATH%
C:\ProgramData\Miniconda3\envs\builder;C:\ProgramData\Miniconda3\envs\builder\Library\mingw-w64\bin;C:\ProgramData\Miniconda3\envs\builder\Library\usr\bin;C:\ProgramData\Miniconda3\envs\builder\Library\bin;C:\ProgramData\Miniconda3\envs\builder\Scripts;C:\ProgramData\Miniconda3\envs\builder\bin;C:\ProgramData\Miniconda3\condabin;C:\ProgramData\Miniconda3;C:\ProgramData\Miniconda3\Library\mingw-w64\bin;C:\ProgramData\Miniconda3\Library\usr\bin;C:\ProgramData\Miniconda3\Library\bin;C:\ProgramData\Miniconda3\Scripts;C:\ProgramData\Miniconda3\share;C:\Program Files (x86)\[...]

(builder) D:\Dev\conda-forge>conda deactivate

D:\Dev\conda-forge>openssl version
OpenSSL 1.1.1d  10 Sep 2019

D:\Dev\conda-forge>which openssl
/c/ProgramData/Miniconda3/Library/bin/openssl

D:\Dev\conda-forge>echo %PATH%
C:\ProgramData\Miniconda3\condabin;C:\ProgramData\Miniconda3;C:\ProgramData\Miniconda3\Library\mingw-w64\bin;C:\ProgramData\Miniconda3\Library\usr\bin;C:\ProgramData\Miniconda3\Library\bin;C:\ProgramData\Miniconda3\Scripts;C:\ProgramData\Miniconda3\share;C:\Program Files (x86)\[...]

Certainly, this is not what I would expect, and it seems that an outdated binary in C:\ProgramData\Miniconda3\envs\builder\Library\usr\bin is not being deleted/updated:

D:\Dev\conda-forge>C:\ProgramData\Miniconda3\envs\builder\Library\usr\bin\openssl version
OpenSSL 1.1.1e  17 Mar 2020

D:\Dev\conda-forge>C:\ProgramData\Miniconda3\envs\builder\Library\bin\openssl version
OpenSSL 1.1.1f  31 Mar 2020

I came across this issue because I suspect(ed) that it has something to do with the cryptography feedstock picking up an outdated (system-?)openssl and failing on windows, but maybe the two are not related.

Details

conda list
# packages in environment at C:\ProgramData\Miniconda3\envs\builder:
#
# Name                    Version                   Build  Channel
beautifulsoup4            4.9.0            py37hc8dfbb8_0    conda-forge
blinker                   1.4                        py_1    conda-forge
boolean.py                3.7                        py_0    conda-forge
bzip2                     1.0.8                hfa6e2cd_2    conda-forge
ca-certificates           2020.4.5.1           hecc5488_0    conda-forge
certifi                   2020.4.5.1       py37hc8dfbb8_0    conda-forge
cffi                      1.14.0           py37ha419a9e_0    conda-forge
chardet                   3.0.4           py37hc8dfbb8_1006    conda-forge
conda                     4.8.3            py37hc8dfbb8_1    conda-forge
conda-build               3.19.2           py37hc8dfbb8_0    conda-forge
conda-forge-pinning       2020.04.10.23.07.47               1    conda-forge
conda-package-handling    1.6.0            py37h702c6c1_2    conda-forge
conda-smithy              3.6.16                     py_0    conda-forge
cryptography              2.8              py37hb32ad35_1    conda-forge
decorator                 4.4.2                      py_0    conda-forge
deprecated                1.2.8              pyh9f0ad1d_0    conda-forge
filelock                  3.0.10                     py_0    conda-forge
git                       2.26.0                        0    conda-forge
gitdb                     4.0.4                      py_0    conda-forge
gitpython                 3.1.1                      py_0    conda-forge
glob2                     0.7                        py_0    conda-forge
idna                      2.9                        py_1    conda-forge
isodate                   0.6.0                      py_1    conda-forge
jinja2                    2.11.1                     py_0    conda-forge
libarchive                3.3.3             h0c0e0cf_1008    conda-forge
libiconv                  1.15              hfa6e2cd_1006    conda-forge
liblief                   0.9.0                ha925a31_3
libxml2                   2.9.10               h9ce36c8_0    conda-forge
license-expression        1.2                        py_0    conda-forge
lz4-c                     1.9.2                h33f27b4_0    conda-forge
lzo                       2.10              hfa6e2cd_1000    conda-forge
m2w64-gcc-libgfortran     5.3.0                         6
m2w64-gcc-libs            5.3.0                         7
m2w64-gcc-libs-core       5.3.0                         7
m2w64-gmp                 6.1.0                         2
m2w64-libwinpthread-git   5.0.0.4634.697f757               2
markupsafe                1.1.1            py37h8055547_1    conda-forge
menuinst                  1.4.16                   py37_0    conda-forge
msrest                    0.6.10                     py_0    conda-forge
msys2-conda-epoch         20160418                      1
networkx                  2.4                        py_1    conda-forge
oauthlib                  3.0.1                      py_0    conda-forge
openssl                   1.1.1f               hfa6e2cd_0    conda-forge
pip                       20.0.2                     py_2    conda-forge
pkginfo                   1.5.0.1                    py_0    conda-forge
psutil                    5.7.0            py37h8055547_1    conda-forge
py-lief                   0.9.0            py37ha925a31_3
pycosat                   0.6.3           py37h8055547_1004    conda-forge
pycparser                 2.20                       py_0    conda-forge
pycrypto                  2.6.1           py37h8055547_1004    conda-forge
pygithub                  1.43.6           py37hc8dfbb8_1    conda-forge
pyjwt                     1.7.1                      py_0    conda-forge
pyopenssl                 19.1.0                     py_1    conda-forge
pysocks                   1.7.1            py37hc8dfbb8_1    conda-forge
python                    3.7.6           h60c2a47_5_cpython    conda-forge
python-libarchive-c       2.9                      py37_0    conda-forge
python_abi                3.7                     1_cp37m    conda-forge
pytz                      2019.3                     py_0    conda-forge
pywin32                   227              py37hfa6e2cd_0    conda-forge
pyyaml                    5.3.1            py37h8055547_0    conda-forge
requests                  2.23.0             pyh8c360ce_2    conda-forge
requests-oauthlib         1.2.0                      py_0    conda-forge
ripgrep                   12.0.1               h301d43c_1    conda-forge
ruamel.yaml               0.16.6           py37h8055547_1    conda-forge
ruamel.yaml.clib          0.2.0            py37h8055547_1    conda-forge
ruamel_yaml               0.15.80         py37h8055547_1001    conda-forge
scrypt                    0.8.13           py37h90766aa_3    conda-forge
setuptools                46.1.3           py37hc8dfbb8_0    conda-forge
six                       1.14.0                     py_1    conda-forge
smmap                     3.0.2              pyh9f0ad1d_0    conda-forge
soupsieve                 1.9.4            py37hc8dfbb8_1    conda-forge
sqlite                    3.30.1               hfa6e2cd_0    conda-forge
toolz                     0.10.0                     py_0    conda-forge
tqdm                      4.45.0             pyh9f0ad1d_0    conda-forge
urllib3                   1.25.8           py37hc8dfbb8_1    conda-forge
vc                        14.1                 h869be7e_1    conda-forge
vs2015_runtime            14.16.27012          h30e32a0_1    conda-forge
vsts-python-api           0.1.22                     py_0    conda-forge
wheel                     0.34.2                     py_1    conda-forge
win_inet_pton             1.1.0                    py37_0    conda-forge
wincertstore              0.2                   py37_1003    conda-forge
wrapt                     1.12.1           py37h8055547_1    conda-forge
xz                        5.2.5                h2fa13f4_0    conda-forge
yaml                      0.2.3                he774522_0    conda-forge
zlib                      1.2.11            h2fa13f4_1006    conda-forge
zstd                      1.4.4                h9f78265_3    conda-forge

[jakirkham]

Windows doesn’t have rpaths though. So this is likely a product of what your PATH looks like.

[h-vetinari]

I don't understand what you mean, sorry.

At the very least, the following binary exists in the builder-env (IMO wrongly) and conflicts with the environment specs (openssl=1.1.1f).

D:\Dev\conda-forge>C:\ProgramData\Miniconda3\envs\builder\Library\usr\bin\openssl version
OpenSSL 1.1.1e  17 Mar 2020

[jjhelmus]

The PREFIX\usr\bin\openssl file is not coming from the openssl package.. The openssl package installs the executable in `PREFIX\Library\bin. If you grep in the conda-meta directory for the environment you may be able to determine which package is installing the file in question.

[jakirkham]

Maybe git? I think we were just rebundling Git for Windows. There’s probably a cleaner way to build git on Windows