Is there a way to do conda init and activate environment without changing $HOME/.profile or $HOME/.bashrc?

[thiagocrepaldi]

My company does not allow changes to $HOME/.profile or $HOME/.bashrc, so I can't use this extension without an alternative way of initializing/activating conda

[jaimergp]

You can run source $CONDA/etc/profile.d/conda.sh on every step.

[thiagocrepaldi]

You can run source $CONDA/etc/profile.d/conda.sh on every step.

Thanks, this is helpful. Then I also need to do conda activate myenv in every step too?

could source $CONDA/etc/profile.d/conda.sh be set as the default shell of the github workflow? that would solve the problem

[jaimergp]

Check options in https://www.gnu.org/software/bash/manual/html_node/Bash-Startup-Files.html. Either --rcfile or BASH_ENV look promising.

Then I also need to do conda activate myenv in every step too?

Yes, but you can also add that to the conda.sh script I guess?

echo "conda activate myenv" >> $CONDA/etc/profile.d/conda.sh