Release v1.2.8, Update package.json (#28)

* Update package.json

* #2 Move images to separate directories, Update output/result file to include time genrated in file name

* #2 Update output fdir with sample output from test run

Author: conorheffron

README.md

@@ -8,7 +8,7 @@
 
 ### Original Image (before crop)
 
-![Original Image for Testing](./CellSegmentationExample_01.png)
+![Original Image for Testing](./doc/CellSegmentationExample_01.png)
 
 ### Sample Edge Detection Script which produces the following result `.png` file.
 

SECURITY.md

@@ -4,8 +4,8 @@
 
 | Version | Supported          |
 | ------- | ------------------ |
-| 1.2.5   | :white_check_mark: |
-| <= 1.2.4   | :x:                |
+| 1.2.8   | :white_check_mark: |
+| <= 1.2.7   | :x:                |
 
 ## Reporting a Vulnerability
 

CellSegmentationExample_01.png doc/CellSegmentationExample_01.pngCellSegmentationExample_01.png renamed to doc/CellSegmentationExample_01.png

@@ -1,3 +1,4 @@
+from datetime import datetime
 import skimage as ski
 import matplotlib.pyplot as plt
 from scipy import ndimage as ndi
@@ -40,10 +41,11 @@ def set_result_image_layout(self, binary, dilate, fill, grayscale, overlay, red_
         axes[3, 0].set_title('7. Dilate Image')
         print("Set overlay / final image to output")
         axes[3, 1].imshow(overlay, cmap=plt.cm.gray)
-        axes[3, 1].set_title('8. Overlay Original Image with Segmented Cells From Dilated Image')
+        axes[3, 1].set_title('8. Overlay Original Image with \n Segmented Cells From Dilated Image')
 
         plt.tight_layout()
-        output_file_name = 'result.png'
+        timestamp = datetime.now().strftime("%Y-%m-%d_%H-%M-%S")
+        output_file_name = f"output/result_{timestamp}.png"
         plt.savefig(output_file_name)
         print("Image processing complete, please see results at: %s" % os.path.join(os.getcwd(), output_file_name))
         plt.show()

original image cropped.png input/original image cropped.pngoriginal image cropped.png renamed to input/original image cropped.png

@@ -3,6 +3,6 @@
 
 def test_main():
   try:
-    subprocess.run(["python", "main.py", "original image cropped.png"])
+    subprocess.run(["python", "main.py", "input/original image cropped.png"])
   except Exception as e:
     pytest.fail(f"An error occurred: {e}")

main.py

@@ -1,5 +1,5 @@
 {
   "name": "bio-cell-red-edge",
-  "version": "1.2.7",
+  "version": "1.2.8",
   "description": "Biological Cell - Image Processing Script"
 }