- warn if multiple fit items are defined for the same parameter #943
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| name: Build and Test | |
| on: | |
| workflow_dispatch: | |
| inputs: | |
| build_type: | |
| description: CMake build type | |
| type: choice | |
| required: true | |
| default: Release | |
| options: | |
| - Release | |
| - Debug | |
| - RelWithDebInfo | |
| - MinSizeRel | |
| run_valgrind: | |
| description: Run tests under Valgrind (Ubuntu only) | |
| type: boolean | |
| required: false | |
| default: false | |
| push: | |
| paths: | |
| - "**" | |
| - "!.github/**" | |
| - ".github/workflows/copasi_se.yml" | |
| env: | |
| BUILD_TYPE: ${{ github.event.inputs.build_type || 'Release' }} | |
| jobs: | |
| build: | |
| name: | |
| ${{ matrix.platform }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| platform: [ubuntu-latest, macos-latest, windows-latest] | |
| runs-on: ${{ matrix.platform }} | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: seanmiddleditch/gha-setup-ninja@master | |
| - name: Add msbuild to PATH (Windows) | |
| if: matrix.platform == 'windows-latest' | |
| uses: ilammy/msvc-dev-cmd@v1.6.0 | |
| - name: Create Build Environment | |
| # Some projects don't allow in-source building, so create a separate build directory | |
| # We'll use this as our working directory for all subsequent commands | |
| shell: bash | |
| run: | | |
| cmake --version | |
| curl -L https://github.com/copasi/copasi-dependencies/releases/latest/download/${{ matrix.platform }}.zip -o ${{ matrix.platform }}.zip | |
| unzip -n -qq ${{ matrix.platform }}.zip -d dependencies | |
| - name: Patch dependencies (windows) | |
| shell: bash | |
| if: matrix.platform == 'windows-latest' | |
| working-directory: ${{github.workspace}}/dependencies/lib/cmake | |
| run: | | |
| sed -i 's|D:/a/copasi-dependencies/copasi-dependencies/install/|${_IMPORT_PREFIX}/|g' *.cmake | |
| - name: Patch dependencies (ubuntu) | |
| shell: bash | |
| if: matrix.platform == 'ubuntu-latest' | |
| working-directory: ${{github.workspace}}/dependencies/lib/cmake | |
| run: | | |
| sed -i 's|/home/runner/work/copasi-dependencies/copasi-dependencies/install/|${_IMPORT_PREFIX}/|g' *.cmake | |
| sudo apt update | |
| sudo apt install -y uuid-dev | |
| - name: Patch dependencies (mac) | |
| shell: bash | |
| if: matrix.platform == 'macos-latest' | |
| working-directory: ${{github.workspace}}/dependencies/lib/cmake | |
| run: | | |
| sed -i '.tmp' 's|/Users/runner/work/copasi-dependencies/copasi-dependencies/install/|${_IMPORT_PREFIX}/|g' *.cmake | |
| rm lapack* | |
| rm ../libblas.a | |
| rm ../liblapack.a | |
| rm ../libf2c.a | |
| rm ../../include/clapack.h | |
| rm ../../include/lapack.h | |
| rm ../../include/blaswrap.h | |
| rm ../../include/f2c.h | |
| - name: Update COPASI Version | |
| shell: bash | |
| working-directory: ${{github.workspace}} | |
| run: ./gitTools/UpdateCopasiVersion | |
| - name: Download SBML Test Suite cases | |
| shell: bash | |
| working-directory: ${{github.workspace}} | |
| run: | | |
| curl -L https://copasi.org/static/test-suite.zip -o test-suite.zip | |
| unzip -n -qq test-suite.zip | |
| - name: Configure COPASI (mac) | |
| shell: bash | |
| if: matrix.platform == 'macos-latest' | |
| run: | | |
| cmake -G Ninja -DCMAKE_BUILD_TYPE=$BUILD_TYPE -DCOPASI_INSTALL_C_API=ON -DSBML_TESTSUITE_RUN=ON -DBUILD_TESTS=ON -DBUILD_GUI=OFF -DENABLE_JIT=OFF -DCOPASI_DEPENDENCY_DIR=./dependencies/ -DCMAKE_INSTALL_PREFIX=./install/ -DBUILD_SBML_TESTSUITE:BOOL=ON -DSBML_TESTSUITE_CASES_DIR:PATH=$PWD/test-suite -S . -B ./build_copasi | |
| - name: Configure COPASI | |
| shell: bash | |
| if: matrix.platform != 'macos-latest' | |
| run: | | |
| cmake -G Ninja -DCMAKE_BUILD_TYPE=$BUILD_TYPE -DCOPASI_INSTALL_C_API=ON -DSBML_TESTSUITE_RUN=ON -DBUILD_TESTS=ON -DBUILD_GUI=OFF -DCOPASI_DEPENDENCY_DIR=./dependencies/ -DCMAKE_INSTALL_PREFIX=./install/ -DBUILD_SBML_TESTSUITE:BOOL=ON -DSBML_TESTSUITE_CASES_DIR:PATH=$PWD/test-suite -S . -B ./build_copasi | |
| - name: Build COPASI | |
| shell: bash | |
| working-directory: ${{github.workspace}}/build_copasi | |
| run: cmake --build . --config $BUILD_TYPE | |
| - name: Install COPASI | |
| shell: bash | |
| working-directory: ${{github.workspace}}/build_copasi | |
| run: cmake --build . --config $BUILD_TYPE --target install | |
| - name: Run test_api under GDB and valgrind | |
| if: matrix.platform == 'ubuntu-latest' && github.event.inputs.run_valgrind == 'true' | |
| working-directory: ${{github.workspace}}/build_copasi | |
| shell: bash | |
| run: | | |
| export srcdir="${{github.workspace}}/tests" | |
| TEST_API="$PWD/tests/test_api" | |
| sudo apt-get install -y gdb valgrind | |
| gdb -batch \ | |
| -ex "set pagination off" \ | |
| -ex run \ | |
| -ex "thread apply all bt full" \ | |
| -ex quit \ | |
| -- "$TEST_API" || true | |
| valgrind --leak-check=full --show-leak-kinds=all --track-origins=yes --error-exitcode=1 --error-limit=no $TEST_API | |
| - name: Test | |
| working-directory: ${{github.workspace}}/build_copasi | |
| shell: bash | |
| run: ctest -C $BUILD_TYPE -V | |
| - name: binary archive | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: | |
| copasi-se-${{ matrix.platform }} | |
| path: ${{github.workspace}}/install/* | |
| retention-days: 10 | |
| if-no-files-found: error |