ValueError: some clades have growth data but are not defined {'XDV.1'}

[plsteinberg]

Current Behavior
Given the error, I inspected the pango-consensus-sequence-summary.json specified in the config. I found only pango lineage names XDV and XDV.1.1 (XDV.1.2 … ) but not XDV.1. Similarly, XDV.1.1’s parent is specified as XDV. I am still trying to understand the parental-child clade mappings, but I was wondering if this relationship was misdefined?

Expected behavior
I expect no value error if the clade XDV.1 was defined as a parent in the summary.json.

How to reproduce
Steps to reproduce the current behavior:
When I run the notebook with this command, I get the error ValueError: some clades have growth data but are not defined {'XDV.1'}.

Possible solution
XDV.1 seems to be a fairly new lineage, is there a an earlier summary.json than the one specified in the config we could use instead? Can XDV.1 be added into the json?

[corneliusroemer]

Amazing catch @plsteinberg - I think the reason for XDV.1 missing is that it only has 1 designated sequence in the pango designation repo. Some must have been redesignated as XDV.1 sublineages. I will add some more upstream and this should resolve the issue.

I'll let you know once the fix is live. Let me know if you find anything else that's confusing. Great work!

[plsteinberg]

Hi Cornelius, are there any updates on this which I may have missed?