diff --git a/.github/dependabot.yml b/.github/dependabot.yml index e73f065..ef0a77c 100644 --- a/.github/dependabot.yml +++ b/.github/dependabot.yml @@ -6,9 +6,9 @@ updates: - package-ecosystem: github-actions directory: / schedule: - interval: monthly + interval: semiannually - package-ecosystem: gitsubmodule directory: / schedule: - interval: monthly + interval: semiannually diff --git a/.github/workflows/test_and_coverage.yml b/.github/workflows/test_and_coverage.yml index 2984ca2..3383230 100644 --- a/.github/workflows/test_and_coverage.yml +++ b/.github/workflows/test_and_coverage.yml @@ -18,7 +18,7 @@ jobs: strategy: matrix: os: [ubuntu-latest, macOS-latest] # windows-latest: do not work. antspyx is not available for windows - python-version: ['3.9', '3.10', '3.11'] + python-version: ['3.10', '3.11'] fail-fast: false steps: @@ -26,18 +26,22 @@ jobs: - name: Clone repo uses: actions/checkout@v6 - - name: Set up Python ${{ matrix.python-version }} + - name: Install the latest version of uv + uses: astral-sh/setup-uv@v7 + + - name: Setup python uses: actions/setup-python@v6 with: python-version: ${{ matrix.python-version }} - - name: Install dependencies - run: | - python -m pip install --upgrade pip setuptools - pip install .[test] + - name: Install tox + run: uv tool install tox --with=tox-uv --with=tox-gh-actions + + - name: Show tox config + run: tox c - name: Run tests and generate coverage report - run: pytest --cov bidsmreye --cov-report=xml + run: tox run -e test - name: Upload coverage to Codecov uses: codecov/codecov-action@v5 diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml index 2336b9a..487fbc3 100644 --- a/.pre-commit-config.yaml +++ b/.pre-commit-config.yaml @@ -96,5 +96,5 @@ repos: ci: autoupdate_commit_msg: 'chore: update pre-commit hooks' - autoupdate_schedule: monthly + autoupdate_schedule: quarterly autofix_commit_msg: 'style: pre-commit fixes' diff --git a/.readthedocs.yml b/.readthedocs.yml index feed142..7b23dc2 100644 --- a/.readthedocs.yml +++ b/.readthedocs.yml @@ -10,17 +10,13 @@ build: os: ubuntu-22.04 tools: python: '3.11' + jobs: + install: + - pip install --upgrade pip + - pip install . --group 'doc' # Build documentation in the docs/ directory with Sphinx sphinx: configuration: docs/source/conf.py builder: html fail_on_warning: false - -# Optionally set the version of Python and requirements required to build your docs -python: - install: - - method: pip - path: . - extra_requirements: - - docs diff --git a/Dockerfile b/Dockerfile index 8cf6e47..90f5934 100644 --- a/Dockerfile +++ b/Dockerfile @@ -1,4 +1,4 @@ -FROM python:3.11.9-slim-bullseye@sha256:8850f5e6e8da9081a6d156252a11161aa22f04d6ed1723c57ca2d5a5d48132bc +FROM python:3.11.15-slim@sha256:9358444059ed78e2975ada2c189f1c1a3144a5dab6f35bff8c981afb38946634 ARG DEBIAN_FRONTEND="noninteractive" diff --git a/pyproject.toml b/pyproject.toml index b06e3bb..620d575 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -2,6 +2,26 @@ build-backend = "hatchling.build" requires = ["hatchling", "hatch-vcs"] +[dependency-groups] +dev = [ + {include-group = "test"}, + {include-group = "doc"}, + "tox>=4", + "tox-uv", + "pre-commit" +] +doc = [ + "faqtory", + "myst-parser", + "rstcheck", + "sphinx", + "sphinx-argparse", + "sphinx-copybutton", + "sphinx-rtd-theme", + "sphinxcontrib-bibtex" +] +test = ["pytest>=6.0.0", "pytest-cov"] + [project] authors = [{name = "Remi Gau", email = "remi.gau@gmail.com"}] classifiers = [ @@ -17,18 +37,18 @@ classifiers = [ "Topic :: Scientific/Engineering :: Image Processing" ] dependencies = [ - "antspyx<0.5", - "anywidget", - "attrs", + "antspyx>=0.4.2,<0.5", + "anywidget>=0.9.21", + "attrs>=26.1.0", "deepmreye>=0.2.1", - "jinja2", - "kaleido", - "keras<3.0.0", + "jinja2>=3.1.6", + "kaleido>=1.2.0", + "keras>=2.15.0,<3.0.0", "pooch>=1.6.0", - "pybids", - "tqdm", - "tomli; python_version < '3.11'", - "rich_argparse" + "pybids>=0.22.0", + "tqdm>=4.67.3", + "tomli>=2.4.0; python_version < '3.11'", + "rich_argparse>=1.7.2" ] description = "bids app using deepMReye to decode eye motion for fMRI time series data" dynamic = ["version"] @@ -44,26 +64,7 @@ keywords = [ license = {file = "LICENSE"} name = "bidsmreye" readme = "README.md" -requires-python = ">=3.9.0" - -[project.optional-dependencies] -dev = ["bidsmreye[doc,test,style]"] -# also stored in docs/requirements.txt -# to speed up readthedocs build -doc = [ - "faqtory", - "myst-parser", - "rstcheck", - "sphinx", - "sphinx-argparse", - "sphinx-copybutton", - "sphinx-rtd-theme", - "sphinxcontrib-bibtex" -] -docs = ["bidsmreye[doc]"] -style = ["pre-commit", "sourcery"] -test = ["pytest", "pytest-cov"] -tests = ["bidsmreye[test]"] +requires-python = ">=3.10.0,<3.12" [project.scripts] bidsmreye = "bidsmreye._cli:cli" @@ -73,9 +74,6 @@ bidsmreye_model = "bidsmreye._cli:cli_download" "Bug Tracker" = "https://github.com/cpp-lln-lab/bidsMReye/issues" Homepage = "https://github.com/cpp-lln-lab/bidsMReye" -[tool.black] -line-length = 90 - [tool.codespell] builtin = "clear,rare" ignore-words-list = "fo,slite" diff --git a/requirements.txt b/requirements.txt index 75b68d9..d9930fa 100644 --- a/requirements.txt +++ b/requirements.txt @@ -1,285 +1,180 @@ -# -# This file is autogenerated by pip-compile with Python 3.11 -# by the following command: -# -# pip-compile --output-file=requirements.txt --strip-extras pyproject.toml -# -absl-py==2.1.0 +# This file was autogenerated by uv via the following command: +# uv export --format requirements-txt --no-group dev --no-group doc --no-group test -o requirements.txt --python 3.11.12 --no-hashes +-e . +absl-py==2.4.0 # via # tensorboard # tensorflow +acres==0.5.0 + # via bidsschematools antspyx==0.4.2 # via - # bidsmreye (pyproject.toml) + # bidsmreye # deepmreye -anyio==4.4.0 - # via - # httpx - # jupyter-server -argon2-cffi==23.1.0 - # via jupyter-server -argon2-cffi-bindings==21.2.0 - # via argon2-cffi -arrow==1.3.0 - # via isoduration -astor==0.8.1 - # via formulaic -asttokens==2.4.1 +anywidget==0.9.21 + # via bidsmreye +asttokens==3.0.1 # via stack-data astunparse==1.6.3 # via tensorflow -async-lru==2.0.4 - # via jupyterlab -attrs==23.2.0 - # via - # bidsmreye (pyproject.toml) - # jsonschema - # referencing -babel==2.15.0 - # via jupyterlab-server -beautifulsoup4==4.12.3 - # via nbconvert -bids-validator==1.14.6 +attrs==26.1.0 + # via bidsmreye +bids-validator==1.14.7.post0 # via pybids -bleach==6.1.0 - # via nbconvert -cachetools==5.4.0 - # via google-auth -certifi==2024.7.4 - # via - # httpcore - # httpx - # requests -cffi==1.16.0 - # via argon2-cffi-bindings -charset-normalizer==3.3.2 +bidsschematools==1.2.1 + # via + # bids-validator + # pybids +certifi==2026.2.25 + # via requests +cffi==2.0.0 ; platform_python_implementation != 'PyPy' + # via cryptography +charset-normalizer==3.4.6 # via requests chart-studio==1.1.0 # via antspyx -click==8.1.7 - # via pybids -comm==0.2.2 +choreographer==1.2.1 + # via kaleido +click==8.3.1 # via - # ipykernel - # ipywidgets -contourpy==1.2.1 + # bidsschematools + # pybids +colorama==0.4.6 ; sys_platform == 'win32' + # via + # click + # ipython + # pytest + # tqdm +comm==0.2.3 + # via ipywidgets +commonmark==0.9.1 + # via rich +contourpy==1.3.2 ; python_full_version < '3.11' + # via matplotlib +contourpy==1.3.3 ; python_full_version >= '3.11' # via matplotlib +cryptography==46.0.5 + # via google-auth cycler==0.12.1 # via matplotlib -debugpy==1.8.2 - # via ipykernel -decorator==5.1.1 +decorator==5.2.1 # via ipython -deepmreye==0.2.1 - # via bidsmreye (pyproject.toml) -defusedxml==0.7.1 - # via nbconvert +deepmreye==0.3 + # via bidsmreye docopt==0.6.2 # via num2words -executing==2.0.1 +exceptiongroup==1.3.1 ; python_full_version < '3.11' + # via + # ipython + # pytest +executing==2.2.1 # via stack-data -fastjsonschema==2.20.0 - # via nbformat -flatbuffers==24.3.25 +flatbuffers==25.12.19 # via tensorflow -fonttools==4.53.1 +fonttools==4.62.1 # via matplotlib -formulaic==0.5.2 +formulaic==1.2.1 # via pybids -fqdn==1.5.1 - # via jsonschema -fsspec==2024.6.1 +frozendict==2.4.7 + # via pybids +fsspec==2026.2.0 # via universal-pathlib -gast==0.6.0 +gast==0.7.0 # via tensorflow -google-auth==2.32.0 +google-auth==2.49.1 # via # google-auth-oauthlib # tensorboard -google-auth-oauthlib==1.2.1 +google-auth-oauthlib==1.3.0 # via tensorboard google-pasta==0.2.0 # via tensorflow -greenlet==3.0.3 +greenlet==3.3.2 ; platform_machine == 'AMD64' or platform_machine == 'WIN32' or platform_machine == 'aarch64' or platform_machine == 'amd64' or platform_machine == 'ppc64le' or platform_machine == 'win32' or platform_machine == 'x86_64' # via sqlalchemy -grpcio==1.65.2 +grpcio==1.78.0 # via # tensorboard # tensorflow -h11==0.14.0 - # via httpcore -h5py==3.11.0 +h5py==3.16.0 # via tensorflow -httpcore==1.0.5 - # via httpx -httpx==0.27.0 - # via jupyterlab -idna==3.7 - # via - # anyio - # httpx - # jsonschema - # requests -imageio==2.34.2 +idna==3.11 + # via requests +imageio==2.37.3 # via scikit-image +importlib-resources==6.5.2 + # via nibabel +iniconfig==2.3.0 + # via pytest interface-meta==1.3.0 # via formulaic -ipykernel==6.29.5 - # via - # jupyter - # jupyter-console - # jupyterlab - # qtconsole -ipython==8.26.0 - # via - # ipykernel - # ipywidgets - # jupyter-console -ipywidgets==8.1.3 - # via jupyter -isoduration==20.11.0 - # via jsonschema -jedi==0.19.1 +ipython==8.38.0 ; python_full_version < '3.11' + # via ipywidgets +ipython==9.10.0 ; python_full_version >= '3.11' + # via ipywidgets +ipython-pygments-lexers==1.1.1 ; python_full_version >= '3.11' + # via ipython +ipywidgets==8.1.8 + # via anywidget +jedi==0.19.2 # via ipython -jinja2==3.1.4 - # via - # bidsmreye (pyproject.toml) - # jupyter-server - # jupyterlab - # jupyterlab-server - # nbconvert -joblib==1.4.2 +jinja2==3.1.6 + # via bidsmreye +joblib==1.5.3 # via scikit-learn -json5==0.9.25 - # via jupyterlab-server -jsonpointer==3.0.0 - # via jsonschema -jsonschema==4.23.0 - # via - # jupyter-events - # jupyterlab-server - # nbformat -jsonschema-specifications==2023.12.1 - # via jsonschema -jupyter==1.0.0 - # via deepmreye -jupyter-client==8.6.2 - # via - # ipykernel - # jupyter-console - # jupyter-server - # nbclient - # qtconsole -jupyter-console==6.6.3 - # via jupyter -jupyter-core==5.7.2 - # via - # ipykernel - # jupyter-client - # jupyter-console - # jupyter-server - # jupyterlab - # nbclient - # nbconvert - # nbformat - # qtconsole -jupyter-events==0.10.0 - # via jupyter-server -jupyter-lsp==2.2.5 - # via jupyterlab -jupyter-server==2.14.2 - # via - # jupyter-lsp - # jupyterlab - # jupyterlab-server - # notebook - # notebook-shim -jupyter-server-terminals==0.5.3 - # via jupyter-server -jupyterlab==4.2.4 - # via notebook -jupyterlab-pygments==0.3.0 - # via nbconvert -jupyterlab-server==2.27.3 - # via - # jupyterlab - # notebook -jupyterlab-widgets==3.0.11 +jupyterlab-widgets==3.0.16 # via ipywidgets -kaleido==0.2.1 - # via bidsmreye (pyproject.toml) +kaleido==1.2.0 + # via bidsmreye keras==2.15.0 # via - # bidsmreye (pyproject.toml) + # bidsmreye # tensorflow -kiwisolver==1.4.5 +kiwisolver==1.5.0 # via matplotlib -lazy-loader==0.4 +lazy-loader==0.5 # via scikit-image libclang==18.1.1 # via tensorflow -markdown==3.6 +logistro==2.0.1 + # via + # choreographer + # kaleido +markdown==3.10.2 # via tensorboard -markdown-it-py==3.0.0 - # via rich -markupsafe==2.1.5 +markupsafe==3.0.3 # via # jinja2 - # nbconvert # werkzeug -matplotlib==3.9.1 - # via - # antspyx - # deepmreye -matplotlib-inline==0.1.7 - # via - # ipykernel - # ipython -mdurl==0.1.2 - # via markdown-it-py -mistune==3.0.2 - # via nbconvert -ml-dtypes==0.3.2 +matplotlib==3.10.8 + # via antspyx +matplotlib-inline==0.2.1 + # via ipython +ml-dtypes==0.2.0 # via tensorflow -nbclient==0.10.0 - # via nbconvert -nbconvert==7.16.4 - # via - # jupyter - # jupyter-server -nbformat==5.10.4 - # via - # jupyter-server - # nbclient - # nbconvert -nest-asyncio==1.6.0 - # via ipykernel -networkx==3.3 +narwhals==2.18.0 + # via + # formulaic + # plotly +networkx==3.4.2 ; python_full_version < '3.11' + # via scikit-image +networkx==3.6.1 ; python_full_version >= '3.11' # via scikit-image -nibabel==5.2.1 +nibabel==5.4.2 # via # antspyx # pybids -notebook==7.2.1 - # via jupyter -notebook-shim==0.2.4 - # via - # jupyterlab - # notebook -num2words==0.5.13 +num2words==0.5.14 # via pybids numpy==1.26.4 # via # antspyx # contourpy - # deepmreye # formulaic # h5py # imageio # matplotlib # ml-dtypes # nibabel - # opt-einsum # pandas # patsy # pybids @@ -290,287 +185,222 @@ numpy==1.26.4 # tensorboard # tensorflow # tifffile -oauthlib==3.2.2 +oauthlib==3.3.1 # via requests-oauthlib -opt-einsum==3.3.0 +opt-einsum==3.4.0 # via tensorflow -overrides==7.7.0 - # via jupyter-server -packaging==24.1 - # via - # ipykernel - # jupyter-server - # jupyterlab - # jupyterlab-server +orjson==3.11.7 + # via kaleido +packaging==26.0 + # via + # kaleido # lazy-loader # matplotlib - # nbconvert # nibabel # plotly # pooch - # qtconsole - # qtpy + # pytest # scikit-image # statsmodels # tensorflow -pandas==2.2.2 + # wheel +pandas==2.3.3 ; python_full_version < '3.11' + # via + # antspyx + # formulaic + # pybids + # statsmodels +pandas==3.0.1 ; python_full_version >= '3.11' # via # antspyx - # deepmreye # formulaic # pybids # statsmodels -pandocfilters==1.5.1 - # via nbconvert -parso==0.8.4 +parso==0.8.6 # via jedi -patsy==0.5.6 +pathlib-abc==0.5.2 + # via universal-pathlib +patsy==1.0.2 # via statsmodels -pexpect==4.9.0 +pexpect==4.9.0 ; sys_platform != 'emscripten' and sys_platform != 'win32' # via ipython -pillow==10.4.0 +pillow==12.1.1 # via # antspyx # imageio # matplotlib # scikit-image -platformdirs==4.2.2 - # via - # jupyter-core - # pooch -plotly==5.23.0 +platformdirs==4.9.4 + # via pooch +plotly==6.6.0 # via # chart-studio # deepmreye -pooch==1.8.2 - # via bidsmreye (pyproject.toml) -prometheus-client==0.20.0 - # via jupyter-server -prompt-toolkit==3.0.47 - # via - # ipython - # jupyter-console -protobuf==4.25.4 +pluggy==1.6.0 + # via pytest +pooch==1.9.0 + # via bidsmreye +prompt-toolkit==3.0.52 + # via ipython +protobuf==4.25.8 # via # tensorboard # tensorflow -psutil==6.0.0 - # via ipykernel -ptyprocess==0.7.0 - # via - # pexpect - # terminado +psygnal==0.15.1 + # via anywidget +ptyprocess==0.7.0 ; sys_platform != 'emscripten' and sys_platform != 'win32' + # via pexpect pure-eval==0.2.3 # via stack-data -pyasn1==0.6.0 - # via - # pyasn1-modules - # rsa -pyasn1-modules==0.4.0 +pyasn1==0.6.3 + # via pyasn1-modules +pyasn1-modules==0.4.2 # via google-auth -pybids==0.17.0 - # via bidsmreye (pyproject.toml) -pycparser==2.22 +pybids==0.22.0 + # via bidsmreye +pycparser==3.0 ; implementation_name != 'PyPy' and platform_python_implementation != 'PyPy' # via cffi -pygments==2.18.0 +pygments==2.19.2 # via # ipython - # jupyter-console - # nbconvert - # qtconsole + # ipython-pygments-lexers + # pytest # rich -pyparsing==3.1.2 +pyparsing==3.3.2 # via matplotlib +pytest==9.0.2 + # via pytest-timeout +pytest-timeout==2.4.0 + # via kaleido python-dateutil==2.9.0.post0 # via - # arrow - # jupyter-client # matplotlib # pandas -python-json-logger==2.0.7 - # via jupyter-events -pytz==2024.1 +pytz==2026.1.post1 ; python_full_version < '3.11' # via pandas -pyyaml==6.0.1 +pyyaml==6.0.3 # via # antspyx - # jupyter-events -pyzmq==26.0.3 - # via - # ipykernel - # jupyter-client - # jupyter-console - # jupyter-server - # qtconsole -qtconsole==5.5.2 - # via jupyter -qtpy==2.4.1 - # via qtconsole -referencing==0.35.1 - # via - # jsonschema - # jsonschema-specifications - # jupyter-events -requests==2.32.3 + # bidsschematools +requests==2.32.5 # via # chart-studio - # jupyterlab-server # pooch # requests-oauthlib # tensorboard requests-oauthlib==2.0.0 # via google-auth-oauthlib -retrying==1.3.4 +retrying==1.4.2 # via chart-studio -rfc3339-validator==0.1.4 - # via - # jsonschema - # jupyter-events -rfc3986-validator==0.1.1 - # via - # jsonschema - # jupyter-events -rich==13.7.1 +rich==12.6.0 # via rich-argparse -rich-argparse==1.5.2 - # via bidsmreye (pyproject.toml) -rpds-py==0.19.1 - # via - # jsonschema - # referencing -rsa==4.9 - # via google-auth -scikit-image==0.24.0 +rich-argparse==1.7.2 + # via bidsmreye +scikit-image==0.25.2 ; python_full_version < '3.11' # via antspyx -scikit-learn==1.5.1 +scikit-image==0.26.0 ; python_full_version >= '3.11' + # via antspyx +scikit-learn==1.7.2 ; python_full_version < '3.11' # via # antspyx # deepmreye -scipy==1.14.0 +scikit-learn==1.8.0 ; python_full_version >= '3.11' # via # antspyx # deepmreye +scipy==1.15.3 ; python_full_version < '3.11' + # via + # antspyx + # formulaic + # pybids + # scikit-image + # scikit-learn + # statsmodels +scipy==1.17.1 ; python_full_version >= '3.11' + # via + # antspyx # formulaic # pybids # scikit-image # scikit-learn # statsmodels -send2trash==1.8.3 - # via jupyter-server -six==1.16.0 +setuptools==82.0.1 + # via + # tensorboard + # tensorflow +simplejson==3.20.2 + # via choreographer +six==1.17.0 # via - # asttokens # astunparse - # bleach # chart-studio # google-pasta - # patsy # python-dateutil - # retrying - # rfc3339-validator # tensorboard # tensorflow -sniffio==1.3.1 - # via - # anyio - # httpx -soupsieve==2.5 - # via beautifulsoup4 -sqlalchemy==2.0.31 +sqlalchemy==2.0.48 # via pybids stack-data==0.6.3 # via ipython -statsmodels==0.14.2 +statsmodels==0.14.6 # via antspyx -tenacity==9.0.0 - # via plotly tensorboard==2.15.2 # via tensorflow tensorboard-data-server==0.7.2 # via tensorboard -tensorflow==2.15.1 +tensorflow==2.15.0 # via deepmreye tensorflow-estimator==2.15.0 # via tensorflow tensorflow-io-gcs-filesystem==0.37.1 # via tensorflow -termcolor==2.4.0 +termcolor==3.3.0 # via tensorflow -terminado==0.18.1 - # via - # jupyter-server - # jupyter-server-terminals -threadpoolctl==3.5.0 +threadpoolctl==3.6.0 # via scikit-learn -tifffile==2024.7.24 +tifffile==2025.5.10 ; python_full_version < '3.11' + # via scikit-image +tifffile==2026.3.3 ; python_full_version >= '3.11' # via scikit-image -tinycss2==1.3.0 - # via nbconvert -tornado==6.4.1 - # via - # ipykernel - # jupyter-client - # jupyter-server - # jupyterlab - # notebook - # terminado -tqdm==4.66.4 - # via bidsmreye (pyproject.toml) +tomli==2.4.0 ; python_full_version < '3.11' + # via + # bidsmreye + # pytest +tqdm==4.67.3 + # via bidsmreye traitlets==5.14.3 # via - # comm - # ipykernel # ipython # ipywidgets - # jupyter-client - # jupyter-console - # jupyter-core - # jupyter-events - # jupyter-server - # jupyterlab # matplotlib-inline - # nbclient - # nbconvert - # nbformat - # qtconsole -types-python-dateutil==2.9.0.20240316 - # via arrow -typing-extensions==4.12.2 +typing-extensions==4.15.0 # via + # anywidget + # cryptography + # exceptiongroup # formulaic + # grpcio # ipython + # nibabel # sqlalchemy # tensorflow -tzdata==2024.1 +tzdata==2025.3 ; python_full_version < '3.11' or sys_platform == 'emscripten' or sys_platform == 'win32' # via pandas -universal-pathlib==0.2.2 +universal-pathlib==0.3.10 # via pybids -uri-template==1.3.0 - # via jsonschema -urllib3==2.2.2 +urllib3==2.6.3 # via requests -wcwidth==0.2.13 +wcwidth==0.6.0 # via prompt-toolkit -webcolors==24.6.0 - # via - # antspyx - # jsonschema -webencodings==0.5.1 - # via - # bleach - # tinycss2 -websocket-client==1.8.0 - # via jupyter-server -werkzeug==3.0.3 +webcolors==25.10.0 + # via antspyx +werkzeug==3.1.6 # via tensorboard -wheel==0.43.0 +wheel==0.46.3 # via astunparse -widgetsnbextension==4.0.11 +widgetsnbextension==4.0.15 # via ipywidgets -wrapt==1.14.1 +wrapt==1.14.2 # via # formulaic # tensorflow - -# The following packages are considered to be unsafe in a requirements file: -# setuptools diff --git a/tox.ini b/tox.ini index 48c5799..efb1ff5 100644 --- a/tox.ini +++ b/tox.ini @@ -2,35 +2,39 @@ [tox] requires = tox>=4 + tox-uv ; run lint by default when just calling "tox" env_list = lint ; ENVIRONMENTS ; ------------ -[style] -description 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